C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 8428
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159919 Gm8428-001 ENSMUSG00000089735 10090 - 6:8377596-8379379 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000159919
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000159919 0.129±0.08 0.211±0.13 0.081±0.01 0.014±0.00 0.206±0.10 0.220±0.15 0.059±0.04 0.137±0.06 0.061±0.03 0.384±0.06 0.025±0.00 0.256±0.19 0.073±0.04 0.162±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002V7 CIL_0002V7_0002 CGP 6:8255936-8597480
CIL_0002V6 CIL_0002V6_0002 CGP 6:8259288-8597548

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302445 KARS-001 protein_coding Homo_sapiens 0 1596
ENST00000319410 KARS-002 protein_coding Homo_sapiens 0 1568
ENST00000415696 KARSP2-001 processed_pseudogene Homo_sapiens 0 276
ENST00000562875 KARS-006 nonsense_mediated_decay Homo_sapiens 0 556
ENST00000564578 KARS-004 nonsense_mediated_decay Homo_sapiens 0 1299
ENST00000566249 KARS-008 nonsense_mediated_decay Homo_sapiens 0 453
ENST00000566560 KARS-003 retained_intron Homo_sapiens 0 798
ENST00000566772 KARS-011 protein_coding Homo_sapiens 0 285
ENST00000568682 KARS-007 protein_coding Homo_sapiens 0 665
ENST00000569298 KARS-013 retained_intron Homo_sapiens 0 224

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