C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysyl-tRNA synthetase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000302445 KARS-001 ENSG00000065427 9606 - 16:75627724-75647679 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000302445
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000302445 51.270±0.00 58.730±0.00 5.968±0.00 19.819±8.54 27.903±12.36 38.049±21.28 23.589±14.95 24.395±15.33 19.192±5.89 27.380±16.11 75.719±59.18 30.418±20.26 40.819±14.90 61.579±26.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002D7 CIL_0002D7_0001 CGP 16:75596981-75648643
CIL_0003YT CIL_0003YT_0001 CGP 16:75627474-75761872

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 NAS tRNA binding
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0004812 IEA aminoacyl-tRNA ligase activity
GO:0004824 IDA:IEA lysine-tRNA ligase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005576 IEA extracellular region
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005759 TAS mitochondrial matrix
GO:0005829 TAS cytosol
GO:0005886 IEA plasma membrane
GO:0006418 TAS:IEA tRNA aminoacylation for protein translation
GO:0006430 IDA:IEA lysyl-tRNA aminoacylation
GO:0008033 NAS tRNA processing
GO:0008219 IEA cell death
GO:0010467 TAS gene expression
GO:0015630 IDA microtubule cytoskeleton
GO:0016032 IEA viral process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034426 Kars-201 protein_coding Mus_musculus 0 2211
ENSMUST00000164470 Kars-203 protein_coding Mus_musculus 0 2170
ENSMUST00000093120 Kars-202 protein_coding Mus_musculus 0 2170
ENSMUST00000159919 Gm8428-001 processed_pseudogene Mus_musculus 0 1596
ENSMUST00000118751 Gm8366-001 processed_pseudogene Mus_musculus 0 1511
ENSMUST00000177584 Gm8320-001 processed_pseudogene Mus_musculus 0 1495
ENSMUST00000178968 Gm8346-001 processed_pseudogene Mus_musculus 0 1495
ENSMUST00000178433 Gm8331-001 processed_pseudogene Mus_musculus 0 1489
ENSMUST00000178371 Gm8303-001 processed_pseudogene Mus_musculus 0 1489
ENSMUST00000121179 Gm8383-001 processed_pseudogene Mus_musculus 0 1489
ENSMUST00000118183 Gm8402-001 processed_pseudogene Mus_musculus 0 1472
ENSMUST00000122077 Kars-ps1-001 processed_pseudogene Mus_musculus 0 1467
ENSMUST00000121143 Gm7155-001 processed_pseudogene Mus_musculus 0 1284
ENSDART00000064924 kars-201 protein_coding Danio_rerio 0 902
ENSDART00000064926 kars-202 protein_coding Danio_rerio 0 894
ENSDART00000148429 kars-001 protein_coding Danio_rerio 0 885
ENSMUST00000121918 Gm15096-001 processed_pseudogene Mus_musculus 0 713
ENSMUST00000119794 Gm15081-001 processed_pseudogene Mus_musculus 0 649

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