C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysyl-tRNA synthetase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000564578 KARS-004 ENSG00000065427 9606 - 16:75627770-75647648 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENST00000564578
Transcript ID Ovary Placenta Testis
ENST00000564578 5.991±0.00 8.981±0.00 17.566±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002D7 CIL_0002D7_0001 CGP 16:75596981-75648643
CIL_0003YT CIL_0003YT_0001 CGP 16:75627474-75761872

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000164470 Kars-203 protein_coding Mus_musculus 0 1818
ENSMUST00000034426 Kars-201 protein_coding Mus_musculus 0 1818
ENSMUST00000093120 Kars-202 protein_coding Mus_musculus 0 1818
ENSMUST00000159919 Gm8428-001 processed_pseudogene Mus_musculus 0 1299
ENSMUST00000118751 Gm8366-001 processed_pseudogene Mus_musculus 0 1297
ENSMUST00000178433 Gm8331-001 processed_pseudogene Mus_musculus 0 1275
ENSMUST00000177584 Gm8320-001 processed_pseudogene Mus_musculus 0 1269
ENSMUST00000178968 Gm8346-001 processed_pseudogene Mus_musculus 0 1269
ENSMUST00000178371 Gm8303-001 processed_pseudogene Mus_musculus 0 1264
ENSMUST00000121179 Gm8383-001 processed_pseudogene Mus_musculus 0 1258
ENSMUST00000118183 Gm8402-001 processed_pseudogene Mus_musculus 0 1242
ENSMUST00000121143 Gm7155-001 processed_pseudogene Mus_musculus 0 1075
ENSDART00000064924 kars-201 protein_coding Danio_rerio 0 880
ENSDART00000064926 kars-202 protein_coding Danio_rerio 0 880
ENSDART00000148429 kars-001 protein_coding Danio_rerio 0 880
ENSMUST00000121918 Gm15096-001 processed_pseudogene Mus_musculus 0 472
ENSMUST00000119794 Gm15081-001 processed_pseudogene Mus_musculus 0 412

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