C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sjogren's syndrome/scleroderma autoantigen 1 homolog (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160141 Sssca1-004 ENSMUSG00000079478 10090 - 19:5730307-5731660 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverENSMUST00000160141
Transcript ID Liver
ENSMUST00000160141 16.039±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W1 CIL_0008W1_0002 VISTA 19:5510095-6112698

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000309328 SSSCA1-001 protein_coding Homo_sapiens 0 195
ENST00000526877 SSSCA1-004 protein_coding Homo_sapiens 3.00018e-42 176
ENST00000527920 SSSCA1-005 protein_coding Homo_sapiens 0 202
ENST00000531405 SSSCA1-002 protein_coding Homo_sapiens 0 202
ENST00000533115 SSSCA1-006 protein_coding Homo_sapiens 0 195

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