C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: HD domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160447 Hddc2-002 ENSMUSG00000000295 10090 + 10:31313407-31317843 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLiverLungOvaryENSMUST00000160447
Transcript ID Adipose Adrenal Brain Breast Colon Liver Lung Ovary
ENSMUST00000160447 0.822±0.02 0.553±0.21 0.280±0.00 0.230±0.06 0.389±0.16 0.035±0.01 0.253±0.08 2.266±0.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008OH CIL_0008OH_0002 VISTA 10:30727819-31328728
CIL_0008OI CIL_0008OI_0002 VISTA 10:30734051-31335579
CIL_0008OD CIL_0008OD_0002 VISTA 10:30753081-31354088
CIL_0008OC CIL_0008OC_0002 VISTA 10:30928891-31529864
CIL_0008OJ CIL_0008OJ_0002 VISTA 10:30972653-31573675
CIL_000666 CIL_000666_0002 CGP 10:31313382-31445921

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318787 HDDC2-001 nonsense_mediated_decay Homo_sapiens 2e-36 158
ENST00000398153 HDDC2-002 protein_coding Homo_sapiens 0 305
ENST00000608284 HDDC2-005 protein_coding Homo_sapiens 0 303
ENST00000608295 HDDC2-004 protein_coding Homo_sapiens 0 324
ENST00000608461 HDDC2-007 retained_intron Homo_sapiens 8e-37 158
ENST00000609477 HDDC2-009 nonsense_mediated_decay Homo_sapiens 7e-37 158
ENST00000609574 HDDC2-006 processed_transcript Homo_sapiens 8e-37 158

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