C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 2389
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160487 Gm2389-001 ENSMUSG00000089976 10090 + 1:85061154-85062642 unprocessed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastHeartLiverENSMUST00000160487
Transcript ID Bladder Brain Breast Heart Liver
ENSMUST00000160487 3.292±0.59 0.314±0.00 12.222±0.00 2.372±0.00 0.295±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AU CIL_0004AU_0006 CGP 1:84992690-85270566

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000243810 SP140L-201 protein_coding Homo_sapiens 6e-24 117
ENST00000343805 SP140-009 protein_coding Homo_sapiens 3e-27 128
ENST00000392045 SP140-002 protein_coding Homo_sapiens 3e-27 128
ENST00000396563 SP140L-202 protein_coding Homo_sapiens 5e-24 117
ENST00000415673 SP140L-009 protein_coding Homo_sapiens 6e-24 117
ENST00000417495 SP140-004 protein_coding Homo_sapiens 3e-27 128
ENST00000420434 SP140-201 protein_coding Homo_sapiens 3e-27 128
ENST00000483728 SP140L-002 retained_intron Homo_sapiens 7e-24 117
ENST00000497212 SP140L-007 retained_intron Homo_sapiens 2e-24 117

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