C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: optic atrophy 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160597 Opa1-001 ENSMUSG00000038084 10090 + 16:29579334-29654884 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000160597
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000160597 7.647±2.39 6.028±1.32 9.129±0.18 13.034±0.79 5.021±2.84 5.111±0.48 15.697±0.50 10.639±0.24 4.113±1.24 2.863±1.58 10.473±3.51 4.671±2.14 4.982±2.05 1.980±1.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000N8 CIL_0000N8_0002 CGP 16:29395853-29654884
CIL_0008CV CIL_0008CV_0002 VISTA 16:29419360-30021162

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001843 IMP neural tube closure
GO:0003924 TAS GTPase activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005739 IDA mitochondrion
GO:0005741 ISS mitochondrial outer membrane
GO:0005743 IDA mitochondrial inner membrane
GO:0005758 IDA mitochondrial intermembrane space
GO:0006184 IEA GTP catabolic process
GO:0006915 IEA apoptotic process
GO:0007005 NAS mitochondrion organization
GO:0007007 ISS inner mitochondrial membrane organization
GO:0007601 ISS visual perception
GO:0008053 IDA mitochondrial fusion
GO:0016021 IEA integral component of membrane
GO:0030061 ISS mitochondrial crista
GO:0030425 IDA dendrite
GO:0090201 IMP negative regulation of release of cytochrome c from mitochondria
GO:1902236 IMP negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway
GO:2001243 IMP negative regulation of intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361150 OPA1-201 protein_coding Homo_sapiens 0 2868
ENST00000361510 OPA1-202 protein_coding Homo_sapiens 0 2868
ENST00000361715 OPA1-203 protein_coding Homo_sapiens 0 2868
ENST00000361828 OPA1-204 protein_coding Homo_sapiens 0 2937
ENST00000361908 OPA1-001 protein_coding Homo_sapiens 0 2868
ENST00000392438 OPA1-002 protein_coding Homo_sapiens 0 3687
ENST00000445863 OPA1-009 protein_coding Homo_sapiens 0 538
ENST00000475899 OPA1-015 retained_intron Homo_sapiens 0 848
ENST00000483516 OPA1-008 retained_intron Homo_sapiens 0 327
ENST00000495476 OPA1-007 retained_intron Homo_sapiens 0 390
ENST00000497189 OPA1-013 retained_intron Homo_sapiens 0 599

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