C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: Hermansky-Pudlak syndrome 1 homolog (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160621 Hps1-008 ENSMUSG00000025188 10090 - 19:42760365-42763876 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaTestisENSMUST00000160621
Transcript ID Brain Ovary Placenta Testis
ENSMUST00000160621 11.380±0.00 26.074±0.00 4.143±0.69 1.297±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00054X CIL_00054X_0002 CGP 19:42725858-42779978
CIL_00054W CIL_00054W_0002 CGP 19:42755105-43388311

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325103 HPS1-009 protein_coding Homo_sapiens 0 604
ENST00000359632 HPS1-013 protein_coding Homo_sapiens 0 597
ENST00000361490 HPS1-011 protein_coding Homo_sapiens 0 604
ENST00000467246 HPS1-012 processed_transcript Homo_sapiens 0 604
ENST00000497527 HPS1-006 processed_transcript Homo_sapiens 0 399
ENST00000498219 HPS1-003 processed_transcript Homo_sapiens 1e-16 92
ENST00000613394 HPS1-201 protein_coding Homo_sapiens 0 604

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