C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: Hermansky-Pudlak syndrome 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000498219 HPS1-003 ENSG00000107521 9606 - 10:98425906-98446873 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverLungENST00000498219
Transcript ID Liver Lung
ENST00000498219 2.354±0.00 1.381±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00054X CIL_00054X_0001 CGP 10:98383565-98446947
CIL_00054W CIL_00054W_0001 CGP 10:98416198-99235862

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026194 Hps1-009 protein_coding Mus_musculus 0 351
ENSMUST00000162061 Hps1-005 protein_coding Mus_musculus 0 339
ENSMUST00000159974 Hps1-004 retained_intron Mus_musculus 0 339
ENSMUST00000069298 Hps1-003 protein_coding Mus_musculus 0 339
ENSMUST00000160455 Hps1-002 protein_coding Mus_musculus 0 339
ENSMUST00000162004 Hps1-001 protein_coding Mus_musculus 0 339
ENSMUST00000160621 Hps1-008 retained_intron Mus_musculus 1e-16 92

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