C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | Hermansky-Pudlak syndrome 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000613394  |
HPS1-201 |
ENSG00000107521 |
9606 | - |
10:98416199-98446947  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00054X | CIL_00054X_0001 | CGP | 10:98383565-98446947 |
| CIL_00054W | CIL_00054W_0001 | CGP | 10:98416198-99235862 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0005515 | IPI | protein binding |
| GO:0005737 | TAS | cytoplasm |
| GO:0005764 | TAS | lysosome |
| GO:0005887 | TAS | integral component of plasma membrane |
| GO:0007040 | TAS | lysosome organization |
| GO:0007601 | IEA | visual perception |
| GO:0016023 | IDA | cytoplasmic membrane-bounded vesicle |
| GO:0031085 | IPI | BLOC-3 complex |
| GO:0046983 | IPI | protein dimerization activity |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000026194
|
Hps1-009 | protein_coding | Mus_musculus | 0 | 1953 |
|
ENSMUST00000162004
|
Hps1-001 | protein_coding | Mus_musculus | 0 | 1940 |
|
ENSMUST00000159974
|
Hps1-004 | retained_intron | Mus_musculus | 0 | 1681 |
|
ENSMUST00000162061
|
Hps1-005 | protein_coding | Mus_musculus | 0 | 1535 |
|
ENSMUST00000160455
|
Hps1-002 | protein_coding | Mus_musculus | 0 | 1234 |
|
ENSMUST00000069298
|
Hps1-003 | protein_coding | Mus_musculus | 0 | 830 |
|
ENSMUST00000160621
|
Hps1-008 | retained_intron | Mus_musculus | 0 | 604 |
|
ENSMUST00000161252
|
Hps1-006 | nonsense_mediated_decay | Mus_musculus | 0.00000003 | 66 |
