C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Hermansky-Pudlak syndrome 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000467246 HPS1-012 ENSG00000107521 9606 - 10:98417015-98446887 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000467246
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000467246 14.040±0.00 18.841±0.00 3.919±2.81 8.517±7.85 9.113±0.00 2.865±2.69 7.199±6.39 8.814±0.00 2.125±1.69 2.050±1.82 12.131±4.12 4.832±0.96 8.079±5.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00054X CIL_00054X_0001 CGP 10:98383565-98446947
CIL_00054W CIL_00054W_0001 CGP 10:98416198-99235862

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026194 Hps1-009 protein_coding Mus_musculus 0 1236
ENSMUST00000160455 Hps1-002 protein_coding Mus_musculus 0 1236
ENSMUST00000162004 Hps1-001 protein_coding Mus_musculus 0 1236
ENSMUST00000159974 Hps1-004 retained_intron Mus_musculus 0 977
ENSMUST00000162061 Hps1-005 protein_coding Mus_musculus 0 832
ENSMUST00000069298 Hps1-003 protein_coding Mus_musculus 0 832
ENSMUST00000160621 Hps1-008 retained_intron Mus_musculus 0 604
ENSMUST00000161252 Hps1-006 nonsense_mediated_decay Mus_musculus 0.00000002 66

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