C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00054W_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000107521-ENSG00000172987 CGP 9606 10:98416198-99235862
GeneTranscriptPositionBiotype
ENSG00000107521 (HPS1)
Hermansky-Pudlak syndrome 1 		ENST00000325103 (HPS1-009) 98416198-98446926 protein_coding
ENST00000338546 (HPS1-010) 98429151-98446913 protein_coding
ENST00000359632 (HPS1-013) 98423608-98431282 protein_coding
ENST00000361490 (HPS1-011) 98416198-98446910 protein_coding
ENST00000414009 (HPS1-014) 98429156-98434091 protein_coding
ENST00000462743 (HPS1-005) 98418152-98420369 processed_transcript
ENST00000465957 (HPS1-008) 98442388-98446927 processed_transcript
ENST00000467246 (HPS1-012) 98417015-98446887 processed_transcript
ENST00000470095 (HPS1-004) 98423617-98434091 processed_transcript
ENST00000474873 (HPS1-007) 98435086-98445413 processed_transcript
ENST00000478087 (HPS1-001) 98423608-98434091 processed_transcript
ENST00000480020 (HPS1-002) 98430571-98446862 processed_transcript
ENST00000497527 (HPS1-006) 98423880-98426103 processed_transcript
ENST00000498219 (HPS1-003) 98425906-98446873 processed_transcript
ENST00000613394 (HPS1-201) 98416199-98446947 protein_coding
ENSG00000172987 (HPSE2)
heparanase 2 (inactive) 		ENST00000370546 (HPSE2-002) 98459574-99235802 protein_coding
ENST00000370549 (HPSE2-003) 98459118-99235862 protein_coding
ENST00000370552 (HPSE2-001) 98459118-99235862 protein_coding
ENST00000404542 (HPSE2-201) 98457077-98744071 protein_coding
ENST00000614306 (HPSE2-202) 99232349-99235802 protein_coding
ENSG00000234109 (RPL7P36)
ribosomal protein L7 pseudogene 36 		ENST00000444633 (RPL7P36-001) 99047639-99048319 processed_pseudogene
ENSG00000236818 (ARL5AP2)
ADP-ribosylation factor-like 5A pseudogene 2 		ENST00000444698 (ARL5AP2-001) 99013103-99013952 processed_pseudogene
ENSG00000264610 (MIR4685)
microRNA 4685 		ENST00000578185 (MIR4685-201) 98431292-98431360 miRNA
CIL_00054W_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025188-ENSMUSG00000074852 CGP 10090 19:42755105-43388311
GeneTranscriptPositionBiotype
ENSMUSG00000025188 (Hps1)
Hermansky-Pudlak syndrome 1 homolog (human) 		ENSMUST00000026194 (Hps1-009) 42755196-42778647 protein_coding
ENSMUST00000069298 (Hps1-003) 42758081-42779965 protein_coding
ENSMUST00000159974 (Hps1-004) 42755196-42779959 retained_intron
ENSMUST00000160455 (Hps1-002) 42755198-42779976 protein_coding
ENSMUST00000160621 (Hps1-008) 42760365-42763876 retained_intron
ENSMUST00000161252 (Hps1-006) 42755583-42757829 nonsense_mediated_decay
ENSMUST00000161761 (Hps1-007) 42766811-42769810 retained_intron
ENSMUST00000162004 (Hps1-001) 42755105-42779978 protein_coding
ENSMUST00000162061 (Hps1-005) 42758480-42778263 protein_coding
ENSMUSG00000047509 (Gm6776)
predicted pseudogene 6776 		ENSMUST00000057752 (Gm6776-201) 43280798-43281697 processed_pseudogene
ENSMUSG00000074852 (Hpse2)
heparanase 2 		ENSMUST00000099428 (Hpse2-201) 42788947-43388311 protein_coding
ENSMUSG00000090235 (Gm16244)
predicted gene 16244 		ENSMUST00000159313 (Gm16244-001) 42779032-42781454 processed_transcript
ENSMUST00000160001 (Gm16244-002) 42779110-42780261 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00054W_0001ENSG00000107521ENST00000325103ENST00000338546ENST00000359632ENST00000361490ENST00000414009ENST00000462743ENST00000465957ENST00000467246ENST00000470095ENST00000474873ENST00000478087ENST00000480020ENST00000497527ENST00000498219ENST00000613394ENSG00000172987ENST00000370546ENST00000370549ENST00000370552ENST00000404542ENST00000614306ENSG00000234109ENST00000444633ENSG00000236818ENST00000444698ENSG00000264610ENST00000578185CIL_00054W_0002ENSMUSG00000025188ENSMUST00000026194ENSMUST00000069298ENSMUST00000159974ENSMUST00000160455ENSMUST00000160621ENSMUST00000161252ENSMUST00000161761ENSMUST00000162004ENSMUST00000162061ENSMUSG00000047509ENSMUST00000057752ENSMUSG00000074852ENSMUST00000099428ENSMUSG00000090235ENSMUST00000159313ENSMUST00000160001
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00054W_0001ENSG00000107521ENST00000325103ENST00000338546ENST00000359632ENST00000361490ENST00000414009ENST00000465957ENST00000467246ENST00000480020ENST00000498219ENSG00000172987ENST00000370546ENST00000370549ENST00000370552ENST00000404542ENSG00000234109ENST00000444633ENSG00000236818ENST00000444698ENSG00000264610ENST00000578185CIL_00054W_0002ENSMUSG00000025188ENSMUST00000026194ENSMUST00000069298ENSMUST00000159974ENSMUST00000160455ENSMUST00000160621ENSMUST00000161252ENSMUST00000162004ENSMUSG00000047509ENSMUST00000057752ENSMUSG00000074852ENSMUST00000099428ENSMUSG00000090235ENSMUST00000159313
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000107521 ENST00000325103 2.076±0.00 4.922±0.00 N/A 1.253±0.00 2.621±0.99 N/A 0.149±0.00 N/A 2.250±0.00 N/A N/A 4.442±3.08 1.997±0.04 3.247±0.00
ENST00000338546 N/A N/A N/A N/A N/A N/A N/A 0.629±0.00 N/A 1.658±0.36 N/A 6.921±0.00 N/A N/A
ENST00000359632 N/A N/A N/A N/A N/A N/A N/A N/A 1.653±0.00 N/A N/A N/A N/A N/A
ENST00000361490 2.223±0.00 N/A N/A 3.283±0.00 N/A 2.663±0.00 0.909±0.00 3.619±0.00 N/A 1.197±0.00 1.418±0.00 N/A N/A N/A
ENST00000414009 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.122±0.00
ENST00000462743 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465957 N/A N/A 0.864±0.00 N/A 1.537±0.00 N/A 1.436±1.07 N/A N/A 2.863±1.78 N/A 1.575±0.00 3.515±0.00 N/A
ENST00000467246 14.040±0.00 18.841±0.00 N/A 3.919±2.81 8.517±7.85 9.113±0.00 2.865±2.69 7.199±6.39 8.814±0.00 2.125±1.69 2.050±1.82 12.131±4.12 4.832±0.96 8.079±5.73
ENST00000470095 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474873 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478087 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480020 N/A N/A N/A N/A N/A 2.992±0.00 N/A N/A N/A N/A N/A 3.423±0.00 N/A N/A
ENST00000497527 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498219 N/A N/A N/A N/A N/A N/A N/A N/A 2.354±0.00 1.381±0.00 N/A N/A N/A N/A
ENST00000613394 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000172987 ENST00000370546 N/A N/A 0.058±0.00 N/A N/A N/A N/A N/A N/A 0.083±0.00 N/A N/A N/A N/A
ENST00000370549 N/A N/A 0.141±0.00 0.424±0.00 N/A N/A N/A N/A N/A N/A N/A 0.256±0.00 N/A N/A
ENST00000370552 N/A N/A N/A N/A N/A 0.300±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000404542 0.350±0.00 0.031±0.00 0.063±0.00 0.895±0.00 0.796±0.00 0.738±0.49 0.013±0.01 0.177±0.07 1.380±0.00 0.404±0.15 N/A 0.102±0.07 0.605±0.22 0.254±0.00
ENST00000614306 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000234109 ENST00000444633 N/A N/A N/A 0.018±0.00 0.121±0.00 0.162±0.00 0.049±0.00 N/A 0.511±0.00 N/A N/A 0.089±0.02 N/A 0.054±0.00
ENSG00000236818 ENST00000444698 N/A 0.019±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000264610 ENST00000578185 N/A N/A N/A N/A N/A N/A N/A 0.590±0.00 N/A N/A N/A 91.803±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025188 ENSMUST00000026194 N/A N/A N/A N/A 3.467±0.09 2.171±0.00 N/A 1.189±0.00 N/A N/A N/A 2.731±0.00 N/A N/A
ENSMUST00000069298 1.193±0.24 N/A 1.324±0.00 N/A 1.569±0.05 N/A 0.114±0.00 N/A 0.730±0.12 0.997±0.04 0.111±0.03 2.635±0.81 0.427±0.11 0.443±0.01
ENSMUST00000159974 1.944±0.44 5.017±1.00 3.060±0.39 5.739±2.78 1.791±1.13 2.485±0.26 0.496±0.05 1.551±0.22 0.826±0.38 1.964±0.17 0.148±0.07 3.520±1.35 0.513±0.07 1.224±0.64
ENSMUST00000160455 N/A 4.157±0.00 N/A N/A N/A N/A N/A 1.361±0.00 N/A 0.968±0.00 0.315±0.00 N/A N/A N/A
ENSMUST00000160621 N/A N/A N/A 11.380±0.00 N/A N/A N/A N/A N/A N/A N/A 26.074±0.00 4.143±0.69 1.297±0.00
ENSMUST00000161252 N/A 67.707±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161761 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162004 5.103±1.04 16.250±1.45 6.291±1.23 N/A 6.477±1.90 5.198±2.27 0.475±0.21 4.002±0.48 2.661±0.79 3.163±0.97 0.186±0.05 8.339±3.15 1.750±0.48 0.461±0.26
ENSMUST00000162061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000047509 ENSMUST00000057752 0.054±0.00 N/A 0.164±0.00 0.010±0.00 0.150±0.00 0.183±0.00 N/A N/A N/A N/A 0.033±0.00 N/A 0.018±0.00 0.113±0.11
ENSMUSG00000074852 ENSMUST00000099428 0.082±0.04 N/A 2.337±0.39 0.042±0.00 0.128±0.06 0.322±0.18 0.076±0.01 0.093±0.05 0.015±0.01 0.512±0.21 N/A 0.105±0.07 0.034±0.02 N/A
ENSMUSG00000090235 ENSMUST00000159313 N/A N/A N/A N/A 1.113±0.00 N/A N/A N/A N/A N/A 0.095±0.00 N/A N/A 0.188±0.00
ENSMUST00000160001 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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