C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 15946
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160654 Gm15946-001 ENSMUSG00000089695 10090 + 17:12962768-12963190 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000160654
Transcript ID Adipose Bladder Brain Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000160654 0.150±0.00 0.149±0.12 0.626±0.38 0.138±0.00 0.171±0.06 0.129±0.00 1.002±0.03 0.237±0.09 0.277±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089P CIL_00089P_0002 VISTA 17:12489717-13093070
CIL_0003I8 CIL_0003I8_0002 CGP 17:12942890-12992546

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295491 MRPS18C-001 protein_coding Homo_sapiens 0 364
ENST00000321945 FAM175A-001 protein_coding Homo_sapiens 1e-23 117
ENST00000475656 FAM175A-002 nonsense_mediated_decay Homo_sapiens 6e-24 117
ENST00000505525 MRPS18C-007 retained_intron Homo_sapiens 1e-24 117
ENST00000505719 MRPS18C-005 protein_coding Homo_sapiens 1.99993e-41 172
ENST00000507019 MRPS18C-003 protein_coding Homo_sapiens 0 246
ENST00000507349 MRPS18C-006 protein_coding Homo_sapiens 7e-40 167
ENST00000509970 MRPS18C-010 protein_coding Homo_sapiens 0 246
ENST00000514581 MRPS18C-004 retained_intron Homo_sapiens 0 250
ENST00000603391 RP11-62H7.3-001 processed_pseudogene Homo_sapiens 1e-36 156

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