C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 175, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000475656 FAM175A-002 ENSG00000163322 9606 - 4:83460945-83485103 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000475656
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000475656 4.588±0.00 3.692±0.00 1.687±0.00 3.023±0.02 2.911±1.20 1.411±0.50 1.475±1.08 2.051±0.12 3.468±2.74 4.063±2.48 1.363±0.05 7.234±1.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006JA CIL_0006JA_0001 CGP 4:83407343-83469735
CIL_0006J9 CIL_0006J9_0001 CGP 4:83455932-83523348
CIL_0006J8 CIL_0006J8_0001 CGP 4:83459517-83605875

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117364 Fam175a-006 protein_coding Mus_musculus 0 248
ENSMUST00000145707 Fam175a-004 retained_intron Mus_musculus 0 248
ENSMUST00000044535 Fam175a-003 nonsense_mediated_decay Mus_musculus 0 248
ENSMUST00000055245 Fam175a-001 protein_coding Mus_musculus 0 248
ENSMUST00000112901 Mrps18c-002 protein_coding Mus_musculus 9.99995e-41 172
ENSMUST00000143477 Mrps18c-005 retained_intron Mus_musculus 3e-27 128
ENSMUST00000112898 Mrps18c-004 protein_coding Mus_musculus 3e-27 128
ENSMUST00000016977 Mrps18c-001 protein_coding Mus_musculus 3e-27 128
ENSMUST00000160654 Gm15946-001 processed_pseudogene Mus_musculus 6e-24 117
ENSMUST00000122080 Gm14237-001 processed_pseudogene Mus_musculus 6e-24 117

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