C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transducin-like enhancer of split 3, homolog of Drosophila E(spl)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160882 Tle3-003 ENSMUSG00000032280 10090 + 9:61373385-61417837 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartLiverLungMuscleOvaryPlacentaENSMUST00000160882
Transcript ID Adipose Brain Breast Heart Liver Lung Muscle Ovary Placenta
ENSMUST00000160882 4.259±0.18 2.490±0.00 4.914±1.04 1.269±0.38 0.878±0.03 3.011±0.00 0.457±0.06 5.449±2.04 15.324±1.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008V4 CIL_0008V4_0002 VISTA 9:61070058-61671069
CIL_0009BU CIL_0009BU_0002 VISTA 9:61300844-61903666

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0016055 IEA Wnt signaling pathway
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000100633 gro2-203 protein_coding Danio_rerio 0 1493
ENSDART00000100632 gro2-202 protein_coding Danio_rerio 0 1445
ENSDART00000025018 gro2-201 protein_coding Danio_rerio 0 520
ENSDART00000045679 gro2-001 protein_coding Danio_rerio 0 520
ENST00000317509 TLE3-004 protein_coding Homo_sapiens 0 1864
ENST00000376472 TLE1-201 protein_coding Homo_sapiens 0 894
ENST00000376499 TLE1-001 protein_coding Homo_sapiens 0 894
ENST00000440567 TLE3-010 protein_coding Homo_sapiens 0 2588
ENST00000451782 TLE3-030 protein_coding Homo_sapiens 0 2531
ENST00000539550 TLE3-022 protein_coding Homo_sapiens 0 1664
ENST00000542329 TLE3-028 retained_intron Homo_sapiens 0 797
ENST00000557815 TLE3-023 retained_intron Homo_sapiens 0 351
ENST00000557907 TLE3-015 protein_coding Homo_sapiens 0 2435
ENST00000557919 TLE3-017 nonsense_mediated_decay Homo_sapiens 0 2586
ENST00000557984 TLE3-026 protein_coding Homo_sapiens 0 274
ENST00000557997 TLE3-016 protein_coding Homo_sapiens 0 2492
ENST00000558201 TLE3-011 protein_coding Homo_sapiens 0 2647
ENST00000558379 TLE3-008 protein_coding Homo_sapiens 0 2492
ENST00000558939 TLE3-001 protein_coding Homo_sapiens 0 2748
ENST00000559048 TLE3-007 protein_coding Homo_sapiens 0 2545
ENST00000559191 TLE3-009 protein_coding Homo_sapiens 0 1506
ENST00000559608 TLE3-029 retained_intron Homo_sapiens 0 348
ENST00000559826 TLE3-005 retained_intron Homo_sapiens 0 401
ENST00000559929 TLE3-013 protein_coding Homo_sapiens 0 3456
ENST00000560525 TLE3-019 nonsense_mediated_decay Homo_sapiens 0 2658
ENST00000560589 TLE3-012 protein_coding Homo_sapiens 0 2748
ENST00000560939 TLE3-020 protein_coding Homo_sapiens 0 2584
ENST00000560996 TLE3-014 protein_coding Homo_sapiens 0 702
ENST00000561453 TLE3-002 nonsense_mediated_decay Homo_sapiens 0 2542

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