C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SPHK1 interactor, AKAP domain containing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000160953 Sphkap-001 ENSMUSG00000026163 10090 - 1:83254139-83408200 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonKidneyLiverLungMuscleOvaryENSMUST00000160953
Transcript ID Adipose Adrenal Brain Colon Kidney Liver Lung Muscle Ovary
ENSMUST00000160953 0.016±0.00 0.591±0.14 1.301±0.00 0.021±0.00 0.016±0.00 0.007±0.00 0.125±0.02 0.020±0.00 0.084±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AJ CIL_0004AJ_0003 CGP 1:83159752-83408200
CIL_0004AK CIL_0004AK_0003 CGP 1:83254139-84364180

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005739 IDA mitochondrion
GO:0008150 ND biological_process
GO:0030018 IDA Z disc
GO:0051018 IPI protein kinase A binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344657 SPHKAP-001 protein_coding Homo_sapiens 0 2159
ENST00000392056 SPHKAP-002 protein_coding Homo_sapiens 0 1650
ENST00000490603 SPHKAP-003 retained_intron Homo_sapiens 0 313

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