C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: programmed cell death 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000161137 Pdcd10-001 ENSMUSG00000027835 10090 - 3:75516490-75556856 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000161137
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000161137 2.516±0.56 0.269±0.01 11.961±2.47 5.101±2.49 1.262±0.30 1.584±0.49 1.626±0.29 3.036±0.58 6.018±5.27 2.755±0.53 3.022±0.76 5.200±4.61 9.106±6.10 3.167±0.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00049O CIL_00049O_0003 CGP 3:75516490-75643495

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0005515 IPI protein binding
GO:0005794 IEA Golgi apparatus
GO:0005829 ISS cytosol
GO:0005886 IEA plasma membrane
GO:0006915 IEA apoptotic process
GO:0008284 ISS positive regulation of cell proliferation
GO:0042803 IEA protein homodimerization activity
GO:0043066 ISS negative regulation of apoptotic process
GO:0043406 ISS positive regulation of MAP kinase activity
GO:0047485 IEA protein N-terminus binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000046902 pdcd10a-201 protein_coding Danio_rerio 0 516
ENSDART00000019063 pdcd10b-001 protein_coding Danio_rerio 0 449
ENST00000392750 PDCD10-001 protein_coding Homo_sapiens 0 1997
ENST00000461494 PDCD10-012 protein_coding Homo_sapiens 0 1223
ENST00000462725 PDCD10-013 protein_coding Homo_sapiens 0 795
ENST00000464360 PDCD10-010 protein_coding Homo_sapiens 0 486
ENST00000470131 PDCD10-005 protein_coding Homo_sapiens 0 1197
ENST00000471885 PDCD10-008 protein_coding Homo_sapiens 0 979
ENST00000473645 PDCD10-003 protein_coding Homo_sapiens 0 1801
ENST00000475915 PDCD10-014 protein_coding Homo_sapiens 0 1061
ENST00000479121 PDCD10-018 protein_coding Homo_sapiens 0 501
ENST00000481136 PDCD10-004 retained_intron Homo_sapiens 0 540
ENST00000483451 PDCD10-011 retained_intron Homo_sapiens 0 717
ENST00000487947 PDCD10-017 protein_coding Homo_sapiens 0 979
ENST00000492139 PDCD10-009 protein_coding Homo_sapiens 0 730
ENST00000492396 PDCD10-016 protein_coding Homo_sapiens 0 1158
ENST00000494502 PDCD10-007 nonsense_mediated_decay Homo_sapiens 0 366
ENST00000497056 PDCD10-002 protein_coding Homo_sapiens 0 1977

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