C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 79
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162014 Ccdc79-002 ENSMUSG00000052616 10090 - 8:104447762-104509910 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000162014
Transcript ID Adipose Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000162014 0.015±0.00 0.030±0.00 0.086±0.06 0.085±0.00 0.078±0.00 0.012±0.00 0.163±0.00 0.010±0.00 0.148±0.07 0.153±0.09 3.580±2.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WN CIL_0007WN_0002 VISTA 8:104309522-104912018
CIL_0004IU CIL_0004IU_0002 CGP 8:104417674-104509910
CIL_0004IV CIL_0004IV_0002 CGP 8:104446719-104534637

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000781 IDA chromosome, telomeric region
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0007129 IMP synapsis
GO:0045141 IMP meiotic telomere clustering

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313294 CCDC79-001 nonsense_mediated_decay Homo_sapiens 0 913
ENST00000433154 CCDC79-201 protein_coding Homo_sapiens 0 1522
ENST00000558713 CCDC79-003 protein_coding Homo_sapiens 0 1522
ENST00000559050 CCDC79-005 protein_coding Homo_sapiens 5e-28 128
ENST00000561333 CCDC79-004 processed_transcript Homo_sapiens 0 1253

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