C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000CM_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000010583-ENSDARG00000027290 CGP 7955 2:43306095-43633838
GeneTranscriptPositionBiotype
ENSDARG00000010583 (pard3)
par-3 partitioning defective 3 homolog (C. elegans) 		ENSDART00000018729 (pard3-002) 43306095-43431177 protein_coding
ENSDART00000056402 (pard3-003) 43306139-43430816 protein_coding
ENSDART00000129134 (pard3-001) 43306095-43490366 protein_coding
ENSDART00000131718 (pard3-004) 43380719-43404200 processed_transcript
ENSDARG00000027290 (nrp1b)
neuropilin 1b 		ENSDART00000098265 (nrp1b-201) 43570359-43629249 protein_coding
ENSDART00000098267 (nrp1b-202) 43570359-43633838 protein_coding
ENSDART00000142078 (nrp1b-001) 43570359-43594680 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0000CM_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025812-ENSMUSG00000025810 CGP 10090 8:127063893-128505462
GeneTranscriptPositionBiotype
ENSMUSG00000025810 (Nrp1)
neuropilin 1 		ENSMUST00000026917 (Nrp1-201) 128359073-128505462 protein_coding
ENSMUSG00000025812 (Pard3)
par-3 family cell polarity regulator 		ENSMUST00000026921 (Pard3-006) 127064295-127610805 protein_coding
ENSMUST00000079777 (Pard3-201) 127064056-127432825 protein_coding
ENSMUST00000108752 (Pard3-202) 127306310-127402059 protein_coding
ENSMUST00000159141 (Pard3-020) 127064259-127277105 nonsense_mediated_decay
ENSMUST00000159511 (Pard3-025) 127447746-127474513 protein_coding
ENSMUST00000159537 (Pard3-012) 127064347-127426684 protein_coding
ENSMUST00000159818 (Pard3-021) 127064259-127370372 nonsense_mediated_decay
ENSMUST00000159940 (Pard3-026) 127579724-127610848 processed_transcript
ENSMUST00000160272 (Pard3-002) 127064056-127612286 protein_coding
ENSMUST00000160581 (Pard3-017) 127064345-127426753 protein_coding
ENSMUST00000160593 (Pard3-005) 127064098-127412201 retained_intron
ENSMUST00000160717 (Pard3-004) 127299585-127402577 protein_coding
ENSMUST00000160766 (Pard3-014) 127064345-127611970 protein_coding
ENSMUST00000161277 (Pard3-013) 127073240-127426684 protein_coding
ENSMUST00000161348 (Pard3-009) 127405445-127433141 protein_coding
ENSMUST00000161355 (Pard3-019) 127064345-127426753 protein_coding
ENSMUST00000162035 (Pard3-010) 127356415-127361791 retained_intron
ENSMUST00000162176 (Pard3-011) 127357311-127398632 protein_coding
ENSMUST00000162309 (Pard3-001) 127063893-127611970 protein_coding
ENSMUST00000162456 (Pard3-007) 127299612-127433144 protein_coding
ENSMUST00000162531 (Pard3-016) 127064345-127474606 protein_coding
ENSMUST00000162536 (Pard3-018) 127064245-127611970 protein_coding
ENSMUST00000162602 (Pard3-015) 127064345-127426753 protein_coding
ENSMUST00000162665 (Pard3-008) 127064295-127610805 protein_coding
ENSMUST00000162727 (Pard3-023) 127389317-127400677 protein_coding
ENSMUST00000162907 (Pard3-003) 127064070-127402577 protein_coding
ENSMUST00000163002 (Pard3-024) 127410649-127474497 retained_intron
ENSMUST00000163021 (Pard3-022) 127371490-127376968 retained_intron
ENSMUSG00000088580 (Gm22968)
predicted gene, 22968 		ENSMUST00000157955 (Gm22968-201) 127597706-127597823 rRNA
ENSMUSG00000090074 (Gm6921)
predicted pseudogene 6921 		ENSMUST00000161478 (Gm6921-001) 127561435-127561869 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000CM_0001ENSDARG00000010583ENSDART00000018729ENSDART00000056402ENSDART00000129134ENSDART00000131718ENSDARG00000027290ENSDART00000098265ENSDART00000098267ENSDART00000142078CIL_0000CM_0002ENSMUSG00000025810ENSMUST00000026917ENSMUSG00000025812ENSMUST00000026921ENSMUST00000079777ENSMUST00000108752ENSMUST00000159141ENSMUST00000159511ENSMUST00000159537ENSMUST00000159818ENSMUST00000159940ENSMUST00000160272ENSMUST00000160581ENSMUST00000160593ENSMUST00000160717ENSMUST00000160766ENSMUST00000161277ENSMUST00000161348ENSMUST00000161355ENSMUST00000162035ENSMUST00000162176ENSMUST00000162309ENSMUST00000162456ENSMUST00000162531ENSMUST00000162536ENSMUST00000162602ENSMUST00000162665ENSMUST00000162727ENSMUST00000162907ENSMUST00000163002ENSMUST00000163021ENSMUSG00000088580ENSMUST00000157955ENSMUSG00000090074ENSMUST00000161478
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000CM_0001ENSDARG00000010583ENSDART00000018729ENSDART00000056402ENSDART00000129134ENSDARG00000027290ENSDART00000098265ENSDART00000098267CIL_0000CM_0002ENSMUSG00000025810ENSMUST00000026917ENSMUSG00000025812ENSMUST00000026921ENSMUST00000079777ENSMUST00000108752ENSMUST00000159537ENSMUST00000160272ENSMUST00000160581ENSMUST00000160766ENSMUST00000161277ENSMUST00000161355ENSMUST00000162176ENSMUST00000162309ENSMUST00000162536ENSMUST00000162602ENSMUST00000162665ENSMUST00000162907ENSMUST00000163002ENSMUST00000163021ENSMUSG00000088580ENSMUST00000157955ENSMUSG00000090074ENSMUST00000161478
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000010583 ENSDART00000018729 N/A N/A N/A 0.534±0.00 N/A N/A 0.741±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000056402 N/A N/A N/A 1.572±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000129134 N/A N/A N/A 0.458±0.13 N/A N/A 1.017±0.56 0.541±0.00 N/A N/A 0.366±0.00 N/A N/A N/A
ENSDART00000131718 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000027290 ENSDART00000098265 N/A N/A N/A N/A N/A N/A N/A N/A 0.126±0.00 N/A N/A N/A N/A N/A
ENSDART00000098267 N/A N/A N/A N/A N/A N/A 4.111±1.46 3.211±0.99 0.413±0.00 N/A N/A N/A N/A N/A
ENSDART00000142078 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025810 ENSMUST00000026917 39.342±5.93 27.825±2.52 11.134±0.00 10.419±6.11 29.091±0.81 6.422±0.99 27.474±2.23 25.177±1.15 6.961±4.75 83.375±7.34 4.082±0.67 17.031±5.64 4.487±2.83 0.691±0.21
ENSMUSG00000025812 ENSMUST00000026921 0.957±0.00 N/A N/A N/A 1.794±0.00 N/A 1.509±0.34 N/A N/A 2.121±0.00 1.746±0.62 4.901±0.00 N/A 0.864±0.31
ENSMUST00000079777 N/A N/A N/A 2.161±0.00 N/A 3.822±1.09 N/A 3.580±1.16 3.288±2.00 N/A N/A 5.985±0.00 N/A 0.340±0.00
ENSMUST00000108752 N/A N/A N/A N/A 2.464±0.00 N/A 1.227±0.22 N/A N/A N/A 1.565±0.00 N/A 8.605±0.71 N/A
ENSMUST00000159141 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159511 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159537 N/A N/A N/A N/A N/A N/A 1.761±0.20 N/A 2.573±0.00 N/A N/A N/A N/A N/A
ENSMUST00000159818 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160272 1.764±0.64 3.240±0.00 2.921±0.82 3.832±1.00 1.119±0.20 2.179±0.00 1.402±0.32 2.773±0.47 1.428±0.64 N/A 1.611±0.28 N/A 3.776±0.90 0.254±0.07
ENSMUST00000160581 N/A N/A N/A N/A N/A N/A 1.465±0.00 3.492±0.00 1.726±0.79 N/A N/A N/A N/A N/A
ENSMUST00000160593 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160717 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160766 N/A N/A N/A N/A 1.147±0.00 N/A N/A N/A 1.790±0.00 N/A N/A 2.900±0.00 4.763±0.00 N/A
ENSMUST00000161277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.347±0.00
ENSMUST00000161348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161355 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.850±0.20 N/A N/A N/A
ENSMUST00000162035 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162176 N/A N/A N/A 7.503±0.00 N/A N/A N/A N/A N/A N/A N/A 18.657±0.00 41.570±10.23 N/A
ENSMUST00000162309 2.488±1.20 4.175±0.57 2.364±0.31 1.955±0.58 3.210±0.41 2.735±0.56 0.620±0.00 1.916±0.32 0.667±0.03 6.378±1.42 1.325±0.38 5.615±1.63 5.514±2.74 0.299±0.05
ENSMUST00000162456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162531 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162536 N/A N/A N/A N/A 1.958±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162602 1.428±0.00 N/A N/A N/A N/A N/A 1.237±0.00 2.873±0.00 2.121±0.00 N/A 2.356±0.47 N/A N/A 0.326±0.06
ENSMUST00000162665 N/A N/A N/A N/A N/A N/A N/A 2.954±0.82 1.151±0.00 N/A N/A N/A N/A 0.289±0.00
ENSMUST00000162727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162907 2.541±0.65 N/A 4.658±0.34 3.450±0.54 2.096±0.91 3.064±0.28 1.000±0.00 2.232±0.64 2.276±1.00 4.754±1.20 1.800±0.32 N/A 5.641±1.47 N/A
ENSMUST00000163002 N/A N/A N/A 4.858±0.00 N/A N/A N/A N/A N/A N/A N/A 22.857±0.00 N/A 12.033±0.00
ENSMUST00000163021 N/A 18.549±0.94 N/A N/A N/A 15.086±3.47 N/A 14.152±0.83 19.276±4.10 N/A N/A 22.270±0.00 N/A N/A
ENSMUSG00000088580 ENSMUST00000157955 N/A N/A N/A 15.194±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000090074 ENSMUST00000161478 0.118±0.00 N/A 0.082±0.03 0.248±0.01 0.377±0.12 N/A N/A N/A 0.052±0.02 0.130±0.00 N/A 0.432±0.00 0.169±0.05 0.193±0.05

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