C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphodiesterase 8B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162412 Pde8b-001 ENSMUSG00000021684 10090 - 13:95024454-95250336 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000162412
Transcript ID Adipose Bladder Brain Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000162412 0.107±0.00 0.193±0.00 0.392±0.00 1.349±0.42 0.321±0.09 0.886±0.18 0.042±0.01 0.351±0.00 3.100±0.99 0.197±0.01 0.401±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DK CIL_0008DK_0002 VISTA 13:94516164-95118068
CIL_00091A CIL_00091A_0002 VISTA 13:94568895-95169433
CIL_000979 CIL_000979_0002 VISTA 13:94573844-95174877
CIL_0000CH CIL_0000CH_0002 CGP 13:94976344-95250336

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000160 IEA phosphorelay signal transduction system
GO:0001662 IMP behavioral fear response
GO:0004115 IDA 3',5'-cyclic-AMP phosphodiesterase activity
GO:0004871 IEA signal transducer activity
GO:0005575 ND cellular_component
GO:0008152 IDA:IEA metabolic process
GO:0008542 IMP visual learning
GO:0035106 IMP operant conditioning
GO:0046872 IEA metal ion binding
GO:0050885 IMP neuromuscular process controlling balance
GO:0090032 IMP negative regulation of steroid hormone biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264917 PDE8B-001 protein_coding Homo_sapiens 0 2004
ENST00000310298 PDE8A-001 protein_coding Homo_sapiens 0 494
ENST00000333194 PDE8B-005 protein_coding Homo_sapiens 0 1498
ENST00000339708 PDE8A-002 protein_coding Homo_sapiens 0 494
ENST00000340978 PDE8B-002 protein_coding Homo_sapiens 0 2004
ENST00000342343 PDE8B-004 protein_coding Homo_sapiens 0 1984
ENST00000346042 PDE8B-003 protein_coding Homo_sapiens 0 2004
ENST00000394553 PDE8A-201 protein_coding Homo_sapiens 0 494
ENST00000478717 PDE8A-003 nonsense_mediated_decay Homo_sapiens 0 494
ENST00000485596 PDE8A-004 nonsense_mediated_decay Homo_sapiens 0 494
ENST00000503963 PDE8B-009 protein_coding Homo_sapiens 0 518
ENST00000505283 PDE8B-006 protein_coding Homo_sapiens 0 1519
ENST00000557957 PDE8A-005 protein_coding Homo_sapiens 0 494
ENST00000559742 PDE8A-006 nonsense_mediated_decay Homo_sapiens 0 494
ENST00000560789 PDE8A-007 retained_intron Homo_sapiens 0 494
ENST00000561024 PDE8A-008 retained_intron Homo_sapiens 0 348

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