C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162491 Trmu-004 ENSMUSG00000022386 10090 + 15:85879312-85892598 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000162491
Transcript ID Adrenal Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000162491 5.119±1.43 7.040±0.33 5.542±1.47 8.000±0.43 4.075±0.49 11.126±0.96 11.050±3.98 11.303±0.40 7.223±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BF CIL_0008BF_0002 VISTA 15:85812646-86415385
CIL_00024F CIL_00024F_0002 CGP 15:85859707-85897394
CIL_00024N CIL_00024N_0002 CGP 15:85879312-86033777

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005739 IDA mitochondrion
GO:0008033 IEA tRNA processing
GO:0008150 ND biological_process
GO:0016740 IEA transferase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290846 TRMU-001 protein_coding Homo_sapiens 0 313
ENST00000381019 TRMU-007 protein_coding Homo_sapiens 0 313
ENST00000381021 TRMU-004 nonsense_mediated_decay Homo_sapiens 0 466
ENST00000441818 TRMU-002 nonsense_mediated_decay Homo_sapiens 0 431
ENST00000453630 TRMU-005 nonsense_mediated_decay Homo_sapiens 0 431
ENST00000456595 TRMU-003 nonsense_mediated_decay Homo_sapiens 0 431
ENST00000457572 TRMU-006 nonsense_mediated_decay Homo_sapiens 0 313

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