C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sine oculis-related homeobox 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162695 Six3-004 ENSMUSG00000038805 10090 + 17:85621031-85629302 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLiverLungOvaryTestisENSMUST00000162695
Transcript ID Breast Liver Lung Ovary Testis
ENSMUST00000162695 0.016±0.00 0.002±0.00 0.018±0.00 0.028±0.00 0.019±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001NM CIL_0001NM_0002 CGP 17:85090726-85629302
CIL_0007KD CIL_0007KD_0002 UCNEbase 17:85172000-86036297
CIL_00083B CIL_00083B_0002 VISTA 17:85187468-85789670
CIL_0009CD CIL_0009CD_0002 VISTA 17:85226742-85830634
CIL_0009CC CIL_0009CC_0002 VISTA 17:85262619-85863333
CIL_0007WX CIL_0007WX_0002 VISTA 17:85278835-85879978
CIL_0001NN CIL_0001NN_0002 CGP 17:85613608-85688274

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001654 IDA eye development
GO:0003677 IDA DNA binding
GO:0003705 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0006606 IDA protein import into nucleus
GO:0007420 IMP brain development
GO:0021536 IGI diencephalon development
GO:0021537 IMP telencephalon development
GO:0021797 IGI forebrain anterior/posterior pattern specification
GO:0030178 IMP negative regulation of Wnt signaling pathway
GO:0043010 IGI camera-type eye development
GO:0043565 IDA sequence-specific DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048512 IMP circadian behavior
GO:0060235 IMP lens induction in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260653 SIX3-001 protein_coding Homo_sapiens 0 1866
ENST00000327720 SIX6-001 protein_coding Homo_sapiens 0 479

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