C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001NN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138083-ENSG00000170577 CGP 9606 2:44941898-45009430
GeneTranscriptPositionBiotype
ENSG00000138083 (SIX3)
SIX homeobox 3 		ENST00000260653 (SIX3-001) 44941898-44946077 protein_coding
ENSG00000170577 (SIX2)
SIX homeobox 2 		ENST00000303077 (SIX2-001) 45005161-45009430 protein_coding
ENSG00000225156 (AC012354.6)
 ENST00000425325 (AC012354.6-001) 44954664-44968762 lincRNA
ENSG00000231848 (AC012354.8)
 ENST00000423051 (AC012354.8-001) 44996413-44996873 processed_pseudogene
CIL_0001NN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038805-ENSMUSG00000024134 CGP 10090 17:85613608-85688274
GeneTranscriptPositionBiotype
ENSMUSG00000024134 (Six2)
sine oculis-related homeobox 2 		ENSMUST00000024947 (Six2-201) 85684282-85688254 protein_coding
ENSMUST00000163568 (Six2-001) 85684277-85688274 protein_coding
ENSMUSG00000038805 (Six3)
sine oculis-related homeobox 3 		ENSMUST00000162695 (Six3-004) 85621031-85629302 protein_coding
ENSMUST00000175898 (Six3-002) 85613608-85625222 protein_coding
ENSMUST00000176081 (Six3-001) 85620834-85626191 protein_coding
ENSMUSG00000093460 (Six3os1)
SIX homeobox 3, opposite strand 1 		ENSMUST00000159030 (Six3os1-013) 85610493-85618275 antisense
ENSMUST00000160691 (Six3os1-011) 85613682-85618358 antisense
ENSMUST00000161146 (Six3os1-006) 85601933-85618372 antisense
ENSMUST00000161688 (Six3os1-012) 85612873-85618275 antisense
ENSMUST00000175913 (Six3os1-008) 85613681-85618073 antisense
ENSMUST00000175921 (Six3os1-009) 85600651-85615348 antisense
ENSMUST00000176375 (Six3os1-007) 85613201-85616246 antisense
ENSMUST00000176432 (Six3os1-005) 85611620-85618221 antisense
ENSMUST00000176556 (Six3os1-002) 85611238-85618385 retained_intron
ENSMUST00000176917 (Six3os1-010) 85609551-85618340 antisense
ENSMUST00000176958 (Six3os1-003) 85607360-85618365 antisense
ENSMUST00000177220 (Six3os1-001) 85607927-85618398 antisense
ENSMUST00000177487 (Six3os1-004) 85611620-85618223 antisense
ENSMUSG00000099332 (Gm27502)
predicted gene, 27502 		ENSMUST00000183495 (Gm27502-201) 85618067-85618265 misc_RNA
ENSMUSG00000099635 (RP24-68F22.7)
predicted gene 28528 		ENSMUST00000188560 (RP24-68F22.7-001) 85619326-85621001 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001NN_0001ENSG00000138083ENST00000260653ENSG00000170577ENST00000303077ENSG00000225156ENST00000425325ENSG00000231848ENST00000423051CIL_0001NN_0002ENSMUSG00000024134ENSMUST00000024947ENSMUST00000163568ENSMUSG00000038805ENSMUST00000162695ENSMUST00000175898ENSMUST00000176081ENSMUSG00000093460ENSMUST00000159030ENSMUST00000160691ENSMUST00000161146ENSMUST00000161688ENSMUST00000175913ENSMUST00000175921ENSMUST00000176375ENSMUST00000176432ENSMUST00000176556ENSMUST00000176917ENSMUST00000176958ENSMUST00000177220ENSMUST00000177487ENSMUSG00000099332ENSMUST00000183495ENSMUSG00000099635ENSMUST00000188560
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001NN_0001ENSG00000138083ENST00000260653ENSG00000170577ENST00000303077ENSG00000225156ENST00000425325ENSG00000231848ENST00000423051CIL_0001NN_0002ENSMUSG00000024134ENSMUST00000024947ENSMUST00000163568ENSMUSG00000038805ENSMUST00000162695ENSMUST00000175898ENSMUST00000176081ENSMUSG00000093460ENSMUST00000159030ENSMUST00000161146ENSMUST00000175921ENSMUST00000176375ENSMUST00000176556ENSMUST00000176958ENSMUST00000177220ENSMUSG00000099332ENSMUST00000183495ENSMUSG00000099635ENSMUST00000188560
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138083 ENST00000260653 0.008±0.00 N/A 0.154±0.00 0.159±0.11 0.117±0.00 0.034±0.00 N/A 0.052±0.00 N/A 0.285±0.00 0.033±0.00 0.027±0.01 0.021±0.00 0.165±0.13
ENSG00000170577 ENST00000303077 2.296±0.00 0.562±0.00 0.067±0.00 0.244±0.00 1.384±0.00 0.854±0.00 0.258±0.22 0.461±0.00 0.277±0.00 0.642±0.59 8.378±7.12 4.604±5.91 0.222±0.23 1.338±0.92
ENSG00000225156 ENST00000425325 N/A N/A N/A 0.022±0.00 0.015±0.00 N/A 0.005±0.00 N/A N/A N/A N/A N/A N/A 0.164±0.15
ENSG00000231848 ENST00000423051 N/A N/A N/A N/A N/A 0.044±0.00 0.516±0.48 0.046±0.00 N/A N/A 0.037±0.00 N/A N/A 0.772±0.65
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024134 ENSMUST00000024947 0.201±0.09 0.239±0.12 0.040±0.00 0.386±0.04 0.356±0.34 0.787±0.30 0.260±0.05 0.153±0.07 0.089±0.06 0.307±0.18 N/A 0.618±0.19 0.219±0.09 1.117±0.30
ENSMUST00000163568 0.016±0.00 N/A 0.121±0.02 0.576±0.12 N/A 0.358±0.16 0.055±0.02 N/A 0.045±0.03 0.038±0.02 9.432±0.53 0.050±0.00 0.864±1.10 1.083±0.32
ENSMUSG00000038805 ENSMUST00000162695 N/A N/A N/A N/A 0.016±0.00 N/A N/A N/A 0.002±0.00 0.018±0.00 N/A 0.028±0.00 N/A 0.019±0.00
ENSMUST00000175898 N/A N/A 0.003±0.00 4.163±3.05 N/A N/A 0.026±0.02 N/A 0.022±0.00 0.012±0.00 N/A N/A 0.061±0.04 N/A
ENSMUST00000176081 N/A N/A N/A 3.839±0.19 0.021±0.00 N/A N/A N/A 0.011±0.00 N/A N/A 0.003±0.00 0.013±0.00 0.003±0.00
ENSMUSG00000093460 ENSMUST00000159030 N/A N/A N/A N/A N/A N/A N/A N/A 0.005±0.00 N/A N/A N/A N/A 0.030±0.01
ENSMUST00000160691 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161146 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.041±0.00 N/A
ENSMUST00000161688 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175921 N/A N/A 0.010±0.00 5.437±0.97 N/A N/A N/A N/A 0.021±0.02 N/A N/A N/A 0.016±0.00 N/A
ENSMUST00000176375 N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A N/A N/A N/A N/A
ENSMUST00000176432 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176556 N/A N/A N/A 2.789±1.67 N/A N/A N/A N/A 0.009±0.00 0.007±0.00 N/A N/A 0.031±0.03 N/A
ENSMUST00000176917 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176958 N/A N/A N/A N/A N/A N/A N/A N/A 0.006±0.00 N/A N/A N/A 0.014±0.00 N/A
ENSMUST00000177220 N/A N/A 0.003±0.00 3.191±0.70 N/A N/A N/A N/A 0.003±0.00 N/A N/A N/A 0.005±0.00 N/A
ENSMUST00000177487 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000099332 ENSMUST00000183495 N/A N/A 0.543±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000099635 ENSMUST00000188560 N/A N/A N/A N/A 0.123±0.00 N/A N/A N/A N/A 0.049±0.00 N/A 0.023±0.00 0.041±0.01 0.089±0.00

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