C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: radixin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163153 Rdx-203 ENSMUSG00000032050 10090 + 9:52047150-52088737 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000163153
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000163153 16.345±2.19 12.930±1.90 12.841±0.86 17.749±2.32 7.949±2.84 3.419±0.46 12.251±1.44 17.606±2.91 24.358±6.79 27.058±6.56 7.352±1.93 31.922±17.62 41.793±15.05 4.605±0.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DH CIL_0008DH_0002 VISTA 9:51847924-52450392

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001726 IDA ruffle
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005902 IDA microvillus
GO:0019898 IEA extrinsic component of membrane
GO:0030027 IDA lamellipodium
GO:0030033 IMP microvillus assembly
GO:0030175 IDA filopodium
GO:0032420 IDA stereocilium
GO:0045176 IMP apical protein localization
GO:0045177 IDA apical part of cell
GO:0051693 IEA actin filament capping

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000343115 RDX-001 protein_coding Homo_sapiens 0 2560
ENST00000367074 GS1-309P15.4-001 processed_pseudogene Homo_sapiens 0 1786
ENST00000405097 RDX-002 protein_coding Homo_sapiens 0 2333
ENST00000527537 RDX-009 retained_intron Homo_sapiens 0 804
ENST00000528172 RP11-23F23.3-001 processed_pseudogene Homo_sapiens 0 1764
ENST00000528498 RDX-006 protein_coding Homo_sapiens 0 2333
ENST00000528556 RDX-013 nonsense_mediated_decay Homo_sapiens 0 697
ENST00000528900 RDX-003 protein_coding Homo_sapiens 0 904
ENST00000529774 RDX-015 retained_intron Homo_sapiens 0 669
ENST00000530085 RDX-016 protein_coding Homo_sapiens 0 756
ENST00000530131 RDX-007 nonsense_mediated_decay Homo_sapiens 0 1764
ENST00000530301 RDX-004 protein_coding Homo_sapiens 0 473
ENST00000530749 RDX-005 nonsense_mediated_decay Homo_sapiens 0 2333
ENST00000532118 RDX-014 protein_coding Homo_sapiens 0 712
ENST00000532461 RDX-008 retained_intron Homo_sapiens 0 959
ENST00000533678 RDX-011 nonsense_mediated_decay Homo_sapiens 0 267
ENST00000533961 RDX-017 retained_intron Homo_sapiens 0 619
ENST00000533991 RDX-010 protein_coding Homo_sapiens 0 580
ENST00000534683 RDX-012 protein_coding Homo_sapiens 0 492
ENST00000544551 RDX-201 protein_coding Homo_sapiens 0 1797

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