C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 172, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163257 Fam172a-203 ENSMUSG00000064138 10090 + 13:77708690-78166238 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000163257
Transcript ID Adipose Bladder Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000163257 2.405±0.06 1.019±0.00 1.018±0.19 0.718±0.00 0.604±0.09 0.521±0.30 1.598±0.31 1.452±0.73 0.404±0.00 1.302±0.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N1 CIL_0007N1_0005 UCNEbase 13:76802395-80648053
CIL_00097W CIL_00097W_0002 VISTA 13:77189933-77791149
CIL_00080H CIL_00080H_0002 VISTA 13:77246465-77849738
CIL_0008SK CIL_0008SK_0002 VISTA 13:77592212-78193533
CIL_0004Z9 CIL_0004Z9_0002 CGP 13:77708690-78166238

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005576 IEA extracellular region
GO:0005783 IEA endoplasmic reticulum

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000135954 fam172a-001 protein_coding Danio_rerio 2e-16 94
ENST00000395965 FAM172A-001 protein_coding Homo_sapiens 0 1720
ENST00000502503 FAM172A-002 nonsense_mediated_decay Homo_sapiens 0 1027
ENST00000504768 FAM172A-008 processed_transcript Homo_sapiens 0 837
ENST00000505869 FAM172A-006 protein_coding Homo_sapiens 0 797
ENST00000506398 FAM172A-004 retained_intron Homo_sapiens 0 1024
ENST00000509163 FAM172A-005 protein_coding Homo_sapiens 0 1458
ENST00000509739 FAM172A-007 protein_coding Homo_sapiens 0 797
ENST00000510445 FAM172A-010 retained_intron Homo_sapiens 0 481
ENST00000511139 FAM172A-011 retained_intron Homo_sapiens 0 424

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