C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 172, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395965 FAM172A-001 ENSG00000113391 9606 - 5:93618069-94111635 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000395965
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000395965 1.010±0.00 2.938±0.00 1.176±0.00 4.301±0.11 4.061±1.81 1.962±0.76 1.664±0.66 1.961±1.01 5.019±0.00 2.258±0.25 0.847±0.00 2.664±1.36 1.770±0.31 1.770±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N1 CIL_0007N1_0003 UCNEbase 5:93009012-93909237
CIL_0008KX CIL_0008KX_0001 VISTA 5:93105796-93709037
CIL_00083A CIL_00083A_0001 VISTA 5:93175759-93777511
CIL_0005KH CIL_0005KH_0002 CGP 5:93583337-94111699
CIL_0008SK CIL_0008SK_0001 VISTA 5:93591279-94192616
CIL_0004Z9 CIL_0004Z9_0001 CGP 5:93618069-94111699

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005576 IEA extracellular region
GO:0005783 IDA endoplasmic reticulum

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163257 Fam172a-203 protein_coding Mus_musculus 0 1720
ENSMUST00000091459 Fam172a-201 protein_coding Mus_musculus 0 1458
ENSMUST00000099358 Fam172a-202 protein_coding Mus_musculus 0 797
ENSDART00000135954 fam172a-001 protein_coding Danio_rerio 1e-22 113

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