C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptojanin 2 binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163402 Synj2bp-001 ENSMUSG00000090935 10090 - 12:81497941-81532911 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000163402
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000163402 3.742±0.91 3.984±0.65 4.738±0.56 3.633±0.67 2.736±0.57 4.102±0.95 3.026±0.55 3.699±0.86 3.816±1.34 4.052±0.46 2.372±0.26 4.368±2.06 2.010±0.79 6.133±1.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002M5 CIL_0002M5_0002 CGP 12:81497941-81568474

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002092 IDA positive regulation of receptor internalization
GO:0005515 IPI protein binding
GO:0005739 IEA mitochondrion
GO:0006897 IEA endocytosis
GO:0008022 IEA protein C-terminus binding
GO:0009986 IDA cell surface
GO:0031307 IEA integral component of mitochondrial outer membrane
GO:0032926 IDA negative regulation of activin receptor signaling pathway
GO:0032927 IDA positive regulation of activin receptor signaling pathway
GO:0048312 IEA intracellular distribution of mitochondria
GO:0070699 IPI type II activin receptor binding
GO:2000010 IDA positive regulation of protein localization to cell surface

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000256366 SYNJ2BP-001 protein_coding Homo_sapiens 0 610
ENST00000554216 SYNJ2BP-002 processed_transcript Homo_sapiens 0 307
ENST00000617124 SYNJ2BP-COX16-005 protein_coding Homo_sapiens 0 411
ENST00000617196 SYNJ2BP-COX16-003 protein_coding Homo_sapiens 0 521
ENST00000618385 SYNJ2BP-COX16-004 nonsense_mediated_decay Homo_sapiens 0 307
ENST00000621525 SYNJ2BP-COX16-002 protein_coding Homo_sapiens 0 440

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