C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptojanin 2 binding protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000256366 SYNJ2BP-001 ENSG00000213463 9606 - 14:70366496-70417045 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000256366
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000256366 2.981±0.00 5.664±0.00 3.908±0.00 1.705±0.11 6.311±1.14 6.306±0.49 5.821±3.27 10.666±4.01 5.218±0.22 4.097±1.42 3.285±0.39 2.679±1.11 3.254±1.89 4.398±0.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002M5 CIL_0002M5_0001 CGP 14:70366496-70459899

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002092 IEA positive regulation of receptor internalization
GO:0005515 IEA protein binding
GO:0005739 IDA mitochondrion
GO:0008022 IEA protein C-terminus binding
GO:0009986 IEA cell surface
GO:0031307 IEA integral component of mitochondrial outer membrane
GO:0032926 IEA negative regulation of activin receptor signaling pathway
GO:0032927 IEA positive regulation of activin receptor signaling pathway
GO:0048312 IEA intracellular distribution of mitochondria
GO:0070699 IEA type II activin receptor binding
GO:2000010 IEA positive regulation of protein localization to cell surface

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163402 Synj2bp-001 protein_coding Mus_musculus 0 610
ENSMUST00000166664 Gm20498-002 protein_coding Mus_musculus 0 436
ENSMUST00000164386 Gm20498-001 protein_coding Mus_musculus 0 436
ENSMUST00000110339 Gm20498-003 processed_transcript Mus_musculus 0 433
ENSMUST00000169158 Synj2bp-003 protein_coding Mus_musculus 0 433
ENSMUST00000170958 Gm20498-005 processed_transcript Mus_musculus 0 364
ENSMUST00000114201 Synj2bp-002 protein_coding Mus_musculus 0 357
ENSMUST00000164431 Synj2bp-004 protein_coding Mus_musculus 0 307
ENSMUST00000019829 Synj2bp-005 retained_intron Mus_musculus 0 305
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0005 53

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