C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: matrilin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163455 Matn2-202 ENSMUSG00000022324 10090 + 15:34306680-34436238 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000163455
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000163455 21.323±7.09 2.428±0.69 22.668±0.28 0.571±0.05 4.671±3.29 4.337±1.67 3.514±0.00 1.525±0.34 0.707±0.12 1.162±0.66 9.663±4.57 0.204±0.00 0.341±0.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001KV CIL_0001KV_0002 CGP 15:34238026-34436242

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001764 IDA neuron migration
GO:0005509 IEA calcium ion binding
GO:0005578 IDA proteinaceous extracellular matrix
GO:0005604 IDA basement membrane
GO:0007411 IGI axon guidance
GO:0008347 IDA glial cell migration
GO:0031104 IMP dendrite regeneration
GO:0031175 IDA neuron projection development
GO:0048678 IMP response to axon injury

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254898 MATN2-201 protein_coding Homo_sapiens 0 3133
ENST00000517321 MATN2-013 protein_coding Homo_sapiens 0 448
ENST00000518154 MATN2-006 protein_coding Homo_sapiens 0 1851
ENST00000518370 MATN2-014 retained_intron Homo_sapiens 0 442
ENST00000519582 MATN2-016 protein_coding Homo_sapiens 0 427
ENST00000520016 MATN2-004 protein_coding Homo_sapiens 0 3133
ENST00000520160 MATN2-008 retained_intron Homo_sapiens 0 220
ENST00000521041 MATN2-009 protein_coding Homo_sapiens 0 422
ENST00000521689 MATN2-001 protein_coding Homo_sapiens 0 2756
ENST00000521952 MATN2-015 nonsense_mediated_decay Homo_sapiens 0 619
ENST00000522025 MATN2-005 protein_coding Homo_sapiens 0 2444
ENST00000522135 MATN2-017 protein_coding Homo_sapiens 0 379
ENST00000522270 MATN2-012 protein_coding Homo_sapiens 0 516
ENST00000523490 MATN2-003 retained_intron Homo_sapiens 0 1284
ENST00000524308 MATN2-002 protein_coding Homo_sapiens 0 2030

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