C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000163783 Cdh16-201 ENSMUSG00000031881 10090 - 8:104614141-104624396 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000163783
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000163783 0.594±0.40 0.002±0.00 0.013±0.00 0.054±0.04 0.014±0.00 0.039±0.01 287.121±45.58 0.021±0.01 4.673±0.73 2.442±1.00 0.032±0.03 0.200±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WN CIL_0007WN_0002 VISTA 8:104309522-104912018
CIL_0004IP CIL_0004IP_0002 CGP 8:104591468-104624396
CIL_0003LX CIL_0003LX_0003 CGP 8:104614141-104631321

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IDA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016021 IEA integral component of membrane
GO:0016323 IDA basolateral plasma membrane
GO:0016339 IDA calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299752 CDH16-001 protein_coding Homo_sapiens 0 2109
ENST00000394055 CDH16-002 protein_coding Homo_sapiens 0 1567
ENST00000565796 CDH16-006 protein_coding Homo_sapiens 0 1546
ENST00000567009 CDH16-009 protein_coding Homo_sapiens 0 544
ENST00000567269 CDH16-003 nonsense_mediated_decay Homo_sapiens 0 1419
ENST00000568698 CDH16-005 nonsense_mediated_decay Homo_sapiens 0 560
ENST00000570262 CDH16-007 protein_coding Homo_sapiens 0 1884

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