C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 16, KSP-cadherin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000568698 CDH16-005 ENSG00000166589 9606 - 16:66908133-66918852 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyOvaryPlacentaTestisENST00000568698
Transcript ID Adrenal Brain Colon Heart Kidney Ovary Placenta Testis
ENST00000568698 0.024±0.00 0.019±0.00 0.098±0.00 0.069±0.00 108.376±0.00 0.119±0.02 0.526±0.42 0.380±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WN CIL_0007WN_0001 VISTA 16:66603173-67205657
CIL_0004IP CIL_0004IP_0001 CGP 16:66878589-66918984
CIL_0003LX CIL_0003LX_0002 CGP 16:66908122-66925644

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000163783 Cdh16-201 protein_coding Mus_musculus 0 560

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