C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: peroxisomal biogenesis factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000520103 PEX2-003 ENSG00000164751 9606 - 8:76982934-77000947 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyMuscleOvaryPlacentaTestisENST00000520103
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Muscle Ovary Placenta Testis
ENST00000520103 3.309±0.00 6.585±0.00 6.021±0.00 3.927±0.00 2.250±0.00 4.799±0.00 2.251±0.00 2.097±0.00 2.527±0.00 3.064±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DA CIL_0008DA_0001 VISTA 8:76385772-76988410
CIL_0008IW CIL_0008IW_0001 VISTA 8:76478447-77079543
CIL_0008U7 CIL_0008U7_0001 VISTA 8:76539317-77142107
CIL_0002OE CIL_0002OE_0001 CGP 8:76681219-77001044
CIL_0007P3 CIL_0007P3_0002 UCNEbase 8:76720446-77719456
CIL_0008QU CIL_0008QU_0001 VISTA 8:76830335-77431965

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000038 IMP very long-chain fatty acid metabolic process
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0005515 IPI:IEA protein binding
GO:0005778 IDA peroxisomal membrane
GO:0005779 IMP integral component of peroxisomal membrane
GO:0006635 IMP fatty acid beta-oxidation
GO:0007031 IMP peroxisome organization
GO:0008270 IEA zinc ion binding
GO:0016020 IDA membrane
GO:0016558 IMP protein import into peroxisome matrix
GO:0016593 IDA Cdc73/Paf1 complex
GO:0031648 IMP protein destabilization
GO:0048147 IMP negative regulation of fibroblast proliferation
GO:0050680 IMP negative regulation of epithelial cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000164828 Pex2-203 protein_coding Mus_musculus 0 1110
ENSMUST00000165309 Pex2-204 protein_coding Mus_musculus 0 1110
ENSMUST00000071280 Pex2-202 protein_coding Mus_musculus 0 1110
ENSMUST00000059021 Pex2-201 protein_coding Mus_musculus 0 1110

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