C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neurotransmitter transporter), member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000567238 SLC6A2-005 ENSG00000103546 9606 + 16:55671671-55703791 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastLiverOvaryTestisENST00000567238
Transcript ID Adrenal Bladder Brain Breast Liver Ovary Testis
ENST00000567238 0.019±0.00 0.051±0.00 0.024±0.00 0.348±0.00 0.063±0.00 0.092±0.00 1.772±0.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000988 CIL_000988_0001 VISTA 16:55084120-55684969
CIL_00098D CIL_00098D_0001 VISTA 16:55090504-55691826
CIL_0005R5 CIL_0005R5_0001 CGP 16:55566672-55706192
CIL_00048S CIL_00048S_0001 CGP 16:55655604-55833337

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005334 TAS norepinephrine:sodium symporter activity
GO:0005515 IPI protein binding
GO:0005886 TAS plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006810 TAS transport
GO:0006836 IEA neurotransmitter transport
GO:0007268 TAS synaptic transmission
GO:0008504 IDA monoamine transmembrane transporter activity
GO:0015844 IDA monoamine transport
GO:0016020 TAS membrane
GO:0016021 IEA integral component of membrane
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072939 Slc6a2-201 protein_coding Mus_musculus 0 1729
ENSMUST00000165470 Slc6a2-202 protein_coding Mus_musculus 0 1729

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