C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CBP80/20-dependent translation initiation factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165559 Ctif-201 ENSMUSG00000052928 10090 - 18:75431224-75697696 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000165559
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000165559 4.341±2.04 1.981±0.70 3.707±2.54 10.332±7.20 3.267±0.69 2.808±1.44 1.139±0.44 2.153±0.81 1.169±1.18 2.972±0.41 1.092±0.60 4.479±1.68 1.747±1.03 0.448±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008P6 CIL_0008P6_0002 VISTA 18:75201597-75805830
CIL_0007UR CIL_0007UR_0002 VISTA 18:75202363-75803667

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003674 ND molecular_function
GO:0003723 IEA RNA binding
GO:0005737 IEA cytoplasm
GO:0006446 IEA regulation of translational initiation
GO:0048471 IEA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000127740 CTIF-201 protein_coding Danio_rerio 2e-32 147
ENST00000256413 CTIF-001 protein_coding Homo_sapiens 0 1605
ENST00000382998 CTIF-003 protein_coding Homo_sapiens 0 1317
ENST00000587752 CTIF-005 protein_coding Homo_sapiens 0 785
ENST00000587769 CTIF-010 processed_transcript Homo_sapiens 0 462
ENST00000587860 CTIF-002 retained_intron Homo_sapiens 0 1122
ENST00000588345 CTIF-006 protein_coding Homo_sapiens 0 433
ENST00000589585 CTIF-008 processed_transcript Homo_sapiens 0 460
ENST00000590422 CTIF-011 processed_transcript Homo_sapiens 9e-30 134
ENST00000591387 CTIF-004 protein_coding Homo_sapiens 0 580
ENST00000591412 CTIF-007 protein_coding Homo_sapiens 0 403
ENST00000592658 CTIF-012 processed_transcript Homo_sapiens 0 230

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