C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mediator complex subunit 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000165684 Med16-003 ENSMUSG00000013833 10090 - 10:79894935-79908898 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000165684
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000165684 11.550±2.73 12.187±5.02 12.876±0.82 8.266±3.25 9.235±5.90 12.027±3.75 11.753±2.12 11.972±1.52 6.670±2.16 8.706±0.87 5.651±0.96 14.411±6.09 6.514±3.67 23.726±13.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0002 VISTA 10:79539861-80142369
CIL_0000HX CIL_0000HX_0002 CGP 10:79890853-79908923
CIL_00011Z CIL_00011Z_0002 CGP 10:79894708-79917006

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003712 IEA transcription cofactor activity
GO:0003824 IEA catalytic activity
GO:0004872 ISS receptor activity
GO:0005654 TAS nucleoplasm
GO:0006366 IC transcription from RNA polymerase II promoter
GO:0006367 ISS transcription initiation from RNA polymerase II promoter
GO:0016020 IEA membrane
GO:0016592 IDA:ISS mediator complex
GO:0030375 ISS thyroid hormone receptor coactivator activity
GO:0030518 IEA intracellular steroid hormone receptor signaling pathway
GO:0030521 ISS androgen receptor signaling pathway
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0046966 ISS thyroid hormone receptor binding
GO:2000273 IEA positive regulation of receptor activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269814 MED16-201 protein_coding Homo_sapiens 0 505
ENST00000312090 MED16-003 protein_coding Homo_sapiens 0 2222
ENST00000325464 MED16-202 protein_coding Homo_sapiens 0 2597
ENST00000395808 MED16-001 protein_coding Homo_sapiens 0 2638
ENST00000586017 MED16-011 protein_coding Homo_sapiens 0 449
ENST00000589119 MED16-006 protein_coding Homo_sapiens 0 2597
ENST00000592373 MED16-020 nonsense_mediated_decay Homo_sapiens 0 460
ENST00000592943 MED16-005 protein_coding Homo_sapiens 0 1400
ENST00000606248 MED16-023 nonsense_mediated_decay Homo_sapiens 0 1997
ENST00000606828 MED16-002 protein_coding Homo_sapiens 0 453
ENST00000616387 MED16-203 protein_coding Homo_sapiens 0 665

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