C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MDS1 and EVI1 complex locus
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000166001 Mecom-013 ENSMUSG00000027684 10090 - 3:29952782-29997702 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastLiverMuscleOvaryPlacentaTestisENSMUST00000166001
Transcript ID Adrenal Brain Breast Liver Muscle Ovary Placenta Testis
ENSMUST00000166001 0.184±0.00 0.168±0.00 0.477±0.16 0.168±0.02 0.290±0.00 1.535±0.28 0.380±0.23 0.056±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000711 CIL_000711_0002 CGP 3:29082023-30548008
CIL_0008SS CIL_0008SS_0002 VISTA 3:29679822-30280970
CIL_000921 CIL_000921_0002 VISTA 3:29804532-30409280
CIL_0007J8 CIL_0007J8_0002 UCNEbase 3:29834894-30452898
CIL_0001ZH CIL_0001ZH_0002 CGP 3:29951299-30599939

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0001780 IMP neutrophil homeostasis
GO:0003677 IDA DNA binding
GO:0006954 IMP inflammatory response
GO:0009617 IMP response to bacterium
GO:0009791 IMP post-embryonic development
GO:0030900 IMP forebrain development
GO:0035115 IMP embryonic forelimb morphogenesis
GO:0035116 IMP embryonic hindlimb morphogenesis
GO:0042127 IMP regulation of cell proliferation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0060039 IMP pericardium development
GO:0072001 IGI renal system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264674 MECOM-201 protein_coding Homo_sapiens 0 3819
ENST00000433243 MECOM-016 protein_coding Homo_sapiens 0 3819
ENST00000460814 MECOM-017 protein_coding Homo_sapiens 0 3687
ENST00000461430 MECOM-014 retained_intron Homo_sapiens 0 385
ENST00000464456 MECOM-020 protein_coding Homo_sapiens 0 3687
ENST00000468789 MECOM-018 protein_coding Homo_sapiens 0 3834
ENST00000472280 MECOM-019 protein_coding Homo_sapiens 0 3819
ENST00000484519 MECOM-012 protein_coding Homo_sapiens 0 422
ENST00000492586 MECOM-015 protein_coding Homo_sapiens 0 645
ENST00000494292 MECOM-004 protein_coding Homo_sapiens 0 3687

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