C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: low density lipoprotein-related protein 1B (deleted in tumors)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167270 Lrp1b-201 ENSMUSG00000049252 10090 - 2:40801393-41789078 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000167270
Transcript ID Adipose Adrenal Colon Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000167270 0.017±0.00 0.039±0.02 0.015±0.00 0.022±0.01 0.004±0.00 0.001±0.00 0.003±0.00 0.003±0.00 0.003±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003NW CIL_0003NW_0002 CGP 2:40595248-43682715

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005041 IDA low-density lipoprotein receptor activity
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0006898 IDA receptor-mediated endocytosis
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0043235 ISO receptor complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000139033 lrp1bb-001 protein_coding Danio_rerio 0 2259
ENST00000389484 LRP1B-001 protein_coding Homo_sapiens 0 12060
ENST00000434794 LRP1B-002 protein_coding Homo_sapiens 0 2484
ENST00000618808 LRP1B-201 protein_coding Homo_sapiens 0 12060

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