C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: very low density lipoprotein receptor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167487 Vldlr-001 ENSMUSG00000024924 10090 + 19:27217357-27254231 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000167487
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000167487 8.470±1.42 1.898±0.52 1.323±0.81 3.355±2.23 4.810±1.65 1.235±0.01 23.069±2.10 6.856±2.20 0.604±0.51 4.619±0.87 29.877±6.27 5.742±1.72 3.233±2.03 0.099±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00051I CIL_00051I_0003 CGP 19:27216484-27337179

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0001948 IEA glycoprotein binding
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005905 IEA coated pit
GO:0006869 IEA lipid transport
GO:0006898 IEA receptor-mediated endocytosis
GO:0008203 IEA cholesterol metabolic process
GO:0016020 ISO membrane
GO:0016021 IEA integral component of membrane
GO:0021517 IEP ventral spinal cord development
GO:0030229 ISS very-low-density lipoprotein particle receptor activity
GO:0034189 IEA very-low-density lipoprotein particle binding
GO:0034361 IEA very-low-density lipoprotein particle
GO:0034436 IEA glycoprotein transport
GO:0034437 IEA glycoprotein transporter activity
GO:0034447 ISS very-low-density lipoprotein particle clearance
GO:0038025 IGI reelin receptor activity
GO:0038026 IGI reelin-mediated signaling pathway
GO:0043235 ISO receptor complex
GO:0045860 IGI positive regulation of protein kinase activity
GO:0048306 IEA calcium-dependent protein binding
GO:1900006 IGI positive regulation of dendrite development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000382096 VLDLR-005 protein_coding Homo_sapiens 0 538
ENST00000382099 VLDLR-002 protein_coding Homo_sapiens 0 3070
ENST00000382100 VLDLR-001 protein_coding Homo_sapiens 0 4464
ENST00000478776 VLDLR-004 processed_transcript Homo_sapiens 0 520

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