C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: G1 to S phase transition 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167571 Gspt1-001 ENSMUSG00000062203 10090 - 16:11219292-11254270 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000167571
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000167571 6.397±2.73 54.929±9.90 8.288±3.87 7.336±0.00 2.474±0.72 17.743±2.78 2.717±1.18 6.960±4.45 8.836±4.39 8.502±1.51 18.553±16.61 8.842±2.42 2.454±0.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001KD CIL_0001KD_0002 CGP 16:11192970-11254270

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003747 ISS translation release factor activity
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0006184 IEA GTP catabolic process
GO:0006479 ISO protein methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340438 GSPT2-001 protein_coding Homo_sapiens 0 2067
ENST00000420576 GSPT1-003 protein_coding Homo_sapiens 0 2259
ENST00000434724 GSPT1-001 protein_coding Homo_sapiens 0 3555
ENST00000439887 GSPT1-002 protein_coding Homo_sapiens 0 3321
ENST00000562169 GSPT1-007 protein_coding Homo_sapiens 0 311
ENST00000562794 GSPT1-010 retained_intron Homo_sapiens 0 734
ENST00000563468 GSPT1-005 protein_coding Homo_sapiens 0 2881
ENST00000564790 GSPT1-009 processed_transcript Homo_sapiens 0 682
ENST00000565267 GSPT1-004 protein_coding Homo_sapiens 0 1766
ENST00000567631 GSPT1-008 retained_intron Homo_sapiens 5.04467e-44 182
ENST00000568849 GSPT1-006 protein_coding Homo_sapiens 0 739

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