C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SCO cytochrome oxidase deficient homolog 2 (yeast)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167643 Sco2-201 ENSMUSG00000091780 10090 - 15:89371639-89373818 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000167643
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000167643 27.488±4.30 26.473±7.67 23.521±3.16 27.096±4.64 21.363±6.61 26.180±2.84 25.533±4.26 34.387±2.91 77.412±52.06 34.447±2.25 8.932±0.91 45.162±16.76 25.448±3.39 33.869±4.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00026C CIL_00026C_0002 CGP 15:89351004-89372826
CIL_0000V1 CIL_0000V1_0003 CGP 15:89355719-89373818
CIL_00025U CIL_00025U_0002 CGP 15:89371639-89377039

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001654 ISS eye development
GO:0001701 IMP in utero embryonic development
GO:0003012 IMP muscle system process
GO:0005507 IEA copper ion binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0005743 IEA mitochondrial inner membrane
GO:0006825 IEA copper ion transport
GO:0006878 IEA cellular copper ion homeostasis
GO:0008535 IMP respiratory chain complex IV assembly
GO:0014823 IMP response to activity
GO:0022904 IMP respiratory electron transport chain
GO:0030016 ISO myofibril
GO:0055070 IMP copper ion homeostasis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000252785 SCO2-002 protein_coding Homo_sapiens 0 604
ENST00000395693 SCO2-001 protein_coding Homo_sapiens 0 604
ENST00000535425 SCO2-201 protein_coding Homo_sapiens 0 604
ENST00000543927 SCO2-202 protein_coding Homo_sapiens 0 604

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