C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: neurexin III
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167734 Nrxn3-004 ENSMUSG00000066392 10090 + 12:88722876-89261571 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLiverLungOvaryENSMUST00000167734
Transcript ID Kidney Liver Lung Ovary
ENSMUST00000167734 0.027±0.00 0.051±0.03 0.017±0.01 0.042±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004U1 CIL_0004U1_0002 CGP 12:88360554-90334935
CIL_0008FT CIL_0008FT_0002 VISTA 12:88683898-89284926
CIL_0004U0 CIL_0004U0_0002 CGP 12:88722876-90738438

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000090934 nrxn3b-202 protein_coding Danio_rerio 0 597
ENSDART00000127050 nrxn3b-203 protein_coding Danio_rerio 0 597
ENSDART00000149694 nrxn3b-001 protein_coding Danio_rerio 0 597
ENSDART00000090646 nrxn3b-201 protein_coding Danio_rerio 0 588
ENST00000335750 NRXN3-201 protein_coding Homo_sapiens 0 1814
ENST00000553363 NRXN3-010 protein_coding Homo_sapiens 0 623
ENST00000553631 NRXN3-009 protein_coding Homo_sapiens 0 411
ENST00000554719 NRXN3-001 protein_coding Homo_sapiens 0 1812
ENST00000554738 NRXN3-002 nonsense_mediated_decay Homo_sapiens 0 2750
ENST00000556088 NRXN3-008 retained_intron Homo_sapiens 0 780
ENST00000556496 NRXN3-003 retained_intron Homo_sapiens 0 1814
ENST00000557081 NRXN3-011 protein_coding Homo_sapiens 0 608

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