C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: neurexin III
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000066392 Nrxn3 10090 + 12:88722876-90334935 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000057634 Nrxn3-002 88953399-90333060 protein_coding
  ENSMUST00000110130 Nrxn3-006 89812483-90333443 protein_coding
  ENSMUST00000110133 Nrxn3-010 89812483-90332899 protein_coding
  ENSMUST00000110138 Nrxn3-005 88722888-88850849 retained_intron
  ENSMUST00000163134 Nrxn3-001 88794504-90334935 protein_coding
  ENSMUST00000163944 Nrxn3-007 88725009-88795115 processed_transcript
  ENSMUST00000164072 Nrxn3-008 88795439-88853243 processed_transcript
  ENSMUST00000167103 Nrxn3-003 88723109-90332897 nonsense_mediated_decay
  ENSMUST00000167734 Nrxn3-004 88722876-89261571 retained_intron
  ENSMUST00000167887 Nrxn3-201 89193106-90332410 protein_coding
  ENSMUST00000170533 Nrxn3-009 88953390-89187319 processed_transcript
  ENSMUST00000190030 Nrxn3-013 88725681-88794981 processed_transcript
  ENSMUST00000190626 Nrxn3-012 88722986-90332878 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110130ENSMUST00000110133ENSMUST00000110138ENSMUST00000163134ENSMUST00000163944ENSMUST00000164072ENSMUST00000167103ENSMUST00000167734ENSMUST00000167887ENSMUST00000170533ENSMUST00000190030ENSMUST00000190626
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110130 0.056±0.00 N/A N/A N/A N/A N/A N/A 0.027±0.01 N/A 0.014±0.00 0.019±0.01 N/A 0.010±0.00 N/A
ENSMUST00000110133 0.195±0.00 0.028±0.00 N/A N/A N/A 0.039±0.01 0.011±0.00 0.038±0.02 0.063±0.00 N/A N/A 0.028±0.02 N/A N/A
ENSMUST00000110138 N/A N/A 0.065±0.00 7.252±0.58 N/A 0.034±0.01 0.017±0.00 0.052±0.02 0.050±0.05 0.013±0.00 N/A N/A 0.245±0.00 N/A
ENSMUST00000163134 N/A N/A 0.036±0.02 8.948±4.45 0.396±0.04 0.009±0.00 0.004±0.00 0.027±0.01 0.022±0.01 0.011±0.00 N/A 0.004±0.00 0.079±0.07 0.228±0.16
ENSMUST00000163944 N/A N/A N/A N/A N/A N/A N/A 0.192±0.00 N/A 0.055±0.01 N/A 0.094±0.02 N/A N/A
ENSMUST00000164072 N/A N/A N/A N/A N/A 0.108±0.04 N/A 0.244±0.14 N/A N/A N/A N/A N/A N/A
ENSMUST00000167103 N/A N/A N/A 5.366±3.09 0.644±0.18 N/A 0.005±0.00 0.024±0.00 0.040±0.00 N/A N/A 0.050±0.02 0.045±0.01 0.986±0.00
ENSMUST00000167734 N/A N/A N/A N/A N/A N/A N/A 0.027±0.00 0.051±0.03 0.017±0.01 N/A 0.042±0.02 N/A N/A
ENSMUST00000167887 0.020±0.01 0.038±0.02 N/A 23.853±0.00 0.733±0.00 N/A N/A 0.038±0.00 0.029±0.00 0.029±0.01 0.012±0.00 0.077±0.05 0.011±0.00 0.116±0.00
ENSMUST00000170533 N/A 0.136±0.01 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.052±0.00 N/A N/A
ENSMUST00000190030 N/A 0.101±0.00 N/A N/A N/A 0.158±0.08 0.046±0.00 N/A 0.161±0.08 0.153±0.00 N/A 0.441±0.00 0.083±0.00 N/A
ENSMUST00000190626 N/A N/A N/A N/A N/A N/A N/A N/A 0.048±0.00 0.007±0.00 0.008±0.00 0.015±0.00 N/A 0.594±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004U1 CIL_0004U1_0002 CGP 12:88360554-90334935
CIL_0008FT CIL_0008FT_0002 VISTA 12:88683898-89284926
CIL_0004U0 CIL_0004U0_0002 CGP 12:88722876-90738438

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0005246 IGI calcium channel regulator activity
GO:0005515 IPI protein binding
GO:0007155 IEA cell adhesion
GO:0007268 IGI synaptic transmission
GO:0007269 IGI neurotransmitter secretion
GO:0007416 IGI synapse assembly
GO:0007612 IEA learning
GO:0016021 IEA integral component of membrane
GO:0030534 IEA adult behavior
GO:0035176 IEA social behavior
GO:0042734 ISA presynaptic membrane
GO:0046872 IEA metal ion binding
GO:0051965 IEA positive regulation of synapse assembly
GO:0071625 IEA vocalization behavior
GO:0090129 IEA positive regulation of synapse maturation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043746 nrxn3a neurexin 3a protein_coding Danio_rerio
ENSDARG00000062693 nrxn3b neurexin 3b protein_coding Danio_rerio
ENSG00000021645 NRXN3 neurexin 3 protein_coding Homo_sapiens

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