C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMAD specific E3 ubiquitin protein ligase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167787 Smurf2-201 ENSMUSG00000018363 10090 - 11:106822613-106920359 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastOvaryPlacentaTestisENSMUST00000167787
Transcript ID Brain Breast Ovary Placenta Testis
ENSMUST00000167787 6.596±0.00 2.270±0.00 7.370±4.54 12.875±0.54 13.593±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006GQ CIL_0006GQ_0002 CGP 11:106789252-106920715
CIL_0001XS CIL_0001XS_0002 CGP 11:106820066-106999541

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IBA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IBA nucleus
GO:0005737 IBA cytoplasm
GO:0005886 IEA plasma membrane
GO:0007179 IBA transforming growth factor beta receptor signaling pathway
GO:0016874 IEA ligase activity
GO:0042787 IBA protein ubiquitination involved in ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262435 SMURF2-001 protein_coding Homo_sapiens 0 3203
ENST00000514992 SMURF2P1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 311
ENST00000578200 SMURF2-007 processed_transcript Homo_sapiens 4.99997e-41 171
ENST00000578386 SMURF2-004 nonsense_mediated_decay Homo_sapiens 0 2407
ENST00000579301 SMURF2P1-002 processed_transcript Homo_sapiens 0 309
ENST00000579588 RP11-848P1.9-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 453
ENST00000580072 SMURF2-006 retained_intron Homo_sapiens 0 512
ENST00000580190 RP11-848P1.9-004 processed_transcript Homo_sapiens 0 230
ENST00000580246 SMURF2-005 retained_intron Homo_sapiens 0 318
ENST00000582081 SMURF2-003 nonsense_mediated_decay Homo_sapiens 0 2835
ENST00000582483 RP11-848P1.9-002 processed_transcript Homo_sapiens 0 483
ENST00000585301 SMURF2-002 protein_coding Homo_sapiens 0 2307

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