C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytochrome P450, family 26, subfamily b, polypeptide 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000168003 Cyp26b1-202 ENSMUSG00000063415 10090 - 6:84571414-84593908 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000168003
Transcript ID Adipose Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000168003 0.661±0.17 6.189±3.80 0.468±0.00 2.099±1.40 0.115±0.00 0.059±0.03 0.650±0.21 0.662±0.00 1.123±0.78 2.111±0.59

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BT CIL_0003BT_0002 CGP 6:84008590-84593908
CIL_0003EG CIL_0003EG_0002 CGP 6:84571414-85069513

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001709 IMP cell fate determination
GO:0005506 IEA iron ion binding
GO:0005783 IEA endoplasmic reticulum
GO:0007140 IMP male meiosis
GO:0007283 IMP spermatogenesis
GO:0009954 IMP proximal/distal pattern formation
GO:0010628 IMP positive regulation of gene expression
GO:0016020 IEA membrane
GO:0020037 IEA heme binding
GO:0030326 IMP embryonic limb morphogenesis
GO:0034653 IC retinoic acid catabolic process
GO:0042573 IC retinoic acid metabolic process
GO:0043587 IMP tongue morphogenesis
GO:0048384 IDA retinoic acid receptor signaling pathway
GO:0048387 IMP negative regulation of retinoic acid receptor signaling pathway
GO:0055114 IEA oxidation-reduction process
GO:0061436 IMP establishment of skin barrier
GO:0070268 IMP cornification
GO:0071300 IEP cellular response to retinoic acid
GO:2001037 IMP positive regulation of tongue muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000001146 CYP26B1-001 protein_coding Homo_sapiens 0 2049
ENST00000412253 CYP26B1-002 protein_coding Homo_sapiens 0 1345
ENST00000461519 CYP26B1-004 protein_coding Homo_sapiens 0 438
ENST00000474509 CYP26B1-003 protein_coding Homo_sapiens 0 348
ENST00000546307 CYP26B1-201 protein_coding Homo_sapiens 0 1341

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