C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytochrome P450, family 26, subfamily B, polypeptide 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000001146 CYP26B1-001 ENSG00000003137 9606 - 2:72129238-72148038 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000001146
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000001146 17.770±0.00 2.949±0.00 0.367±0.00 2.429±1.04 2.931±2.54 2.493±0.00 0.349±0.25 11.290±0.00 0.247±0.00 0.872±0.00 2.807±1.74 8.067±5.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BT CIL_0003BT_0001 CGP 2:71453722-72148038
CIL_0003EG CIL_0003EG_0001 CGP 2:72129238-72826041

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001709 ISS cell fate determination
GO:0001972 IDA retinoic acid binding
GO:0005506 IEA iron ion binding
GO:0005737 IDA cytoplasm
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006766 TAS vitamin metabolic process
GO:0006805 TAS xenobiotic metabolic process
GO:0007140 ISS male meiosis
GO:0007283 ISS spermatogenesis
GO:0008401 IDA retinoic acid 4-hydroxylase activity
GO:0009954 ISS proximal/distal pattern formation
GO:0010628 IEA positive regulation of gene expression
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037 IEA:NAS heme binding
GO:0030326 ISS embryonic limb morphogenesis
GO:0034653 IDA retinoic acid catabolic process
GO:0042573 IEA retinoic acid metabolic process
GO:0043587 IEA tongue morphogenesis
GO:0044281 TAS small molecule metabolic process
GO:0048384 IEA retinoic acid receptor signaling pathway
GO:0048387 TAS negative regulation of retinoic acid receptor signaling pathway
GO:0055114 IEA:IDA oxidation-reduction process
GO:0060349 IMP bone morphogenesis
GO:0061436 IEA establishment of skin barrier
GO:0070268 IEA cornification
GO:0071300 IEA cellular response to retinoic acid
GO:2001037 IEA positive regulation of tongue muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077705 Cyp26b1-201 protein_coding Mus_musculus 0 2050
ENSMUST00000168003 Cyp26b1-202 protein_coding Mus_musculus 0 2049

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