C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tudor domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000168275 Tdrd3-003 ENSMUSG00000022019 10090 + 14:87416639-87545360 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000168275
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000168275 1.413±0.56 1.251±0.00 2.812±0.00 6.979±2.21 0.974±0.28 1.422±0.24 1.173±0.22 1.428±0.39 1.372±0.67 1.094±0.04 1.076±0.23 1.886±1.21 1.855±1.12 4.529±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MG CIL_0000MG_0002 CGP 14:86655367-87545373
CIL_0005KQ CIL_0005KQ_0003 CGP 14:87416639-88471396

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 ISS chromatin binding
GO:0003713 ISS transcription coactivator activity
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0016568 IEA chromatin modification
GO:0035064 ISS methylated histone binding
GO:0035145 ISS exon-exon junction complex
GO:0044822 IEA poly(A) RNA binding
GO:2001141 IEA regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000196169 TDRD3-201 protein_coding Homo_sapiens 0 2296
ENST00000377881 TDRD3-003 protein_coding Homo_sapiens 0 2405
ENST00000377882 TDRD3-005 protein_coding Homo_sapiens 0 706
ENST00000377894 TDRD3-001 protein_coding Homo_sapiens 0 2303
ENST00000471710 TDRD3-006 retained_intron Homo_sapiens 0 466
ENST00000484389 TDRD3-002 nonsense_mediated_decay Homo_sapiens 0 422
ENST00000535286 TDRD3-202 protein_coding Homo_sapiens 0 2425
ENST00000621840 TDRD3-203 protein_coding Homo_sapiens 0 2300

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