C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Parkinson disease (autosomal recessive, juvenile) 2, parkin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000168593 Park2-201 ENSMUSG00000023826 10090 + 17:11067125-11493173 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaTestisENSMUST00000168593
Transcript ID Placenta Testis
ENSMUST00000168593 0.132±0.00 3.807±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AN CIL_0009AN_0002 VISTA 17:10443926-11046179
CIL_000800 CIL_000800_0002 VISTA 17:10785724-11388280

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001963 IMP synaptic transmission, dopaminergic
GO:0001964 IMP startle response
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005829 IEA cytosol
GO:0007612 IMP learning
GO:0007626 IMP locomotory behavior
GO:0008344 IMP adult locomotory behavior
GO:0016567 IEA protein ubiquitination
GO:0019538 IMP protein metabolic process
GO:0035249 IMP synaptic transmission, glutamatergic
GO:0042415 IMP norepinephrine metabolic process
GO:0042417 IMP dopamine metabolic process
GO:0043005 IDA neuron projection
GO:0043234 IDA protein complex
GO:0046928 IMP regulation of neurotransmitter secretion
GO:0050804 IMP regulation of synaptic transmission
GO:0051583 IMP dopamine uptake involved in synaptic transmission

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338468 PARK2-003 protein_coding Homo_sapiens 0 333
ENST00000366892 PARK2-002 protein_coding Homo_sapiens 0 603
ENST00000366894 PARK2-001 protein_coding Homo_sapiens 0 294
ENST00000366896 PARK2-006 protein_coding Homo_sapiens 0 224
ENST00000366897 PARK2-005 protein_coding Homo_sapiens 0 396
ENST00000366898 PARK2-004 protein_coding Homo_sapiens 0 603
ENST00000479615 PARK2-007 nonsense_mediated_decay Homo_sapiens 0 388

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