C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: slit homolog 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169141 Slit1-002 ENSMUSG00000025020 10090 - 19:41600257-41743492 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000169141
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000169141 0.047±0.02 2.845±1.36 0.031±0.01 7.987±3.21 0.100±0.03 0.226±0.12 0.021±0.01 0.022±0.01 0.055±0.03 0.042±0.02 0.186±0.05 0.263±0.07 6.193±6.27 0.141±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SO CIL_0008SO_0002 VISTA 19:41258217-41859329
CIL_0003F3 CIL_0003F3_0002 CGP 19:41600257-41802084

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005102 TAS receptor binding
GO:0005509 IEA calcium ion binding
GO:0005615 IDA extracellular space
GO:0007409 IDA axonogenesis
GO:0007411 IGI axon guidance
GO:0021772 IGI olfactory bulb development
GO:0022028 IMP tangential migration from the subventricular zone to the olfactory bulb
GO:0022029 IGI telencephalon cell migration
GO:0031290 IGI retinal ganglion cell axon guidance
GO:0033563 IGI dorsal/ventral axon guidance
GO:0040023 IDA establishment of nucleus localization
GO:0048495 IPI Roundabout binding
GO:0048812 IGI neuron projection morphogenesis
GO:0050919 IMP negative chemotaxis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000066080 slit1a-201 protein_coding Danio_rerio 0 1382
ENSDART00000128969 slit1a-001 protein_coding Danio_rerio 0 1382
ENST00000266058 SLIT1-001 protein_coding Homo_sapiens 0 5454
ENST00000314867 SLIT1-006 protein_coding Homo_sapiens 0 1690
ENST00000371041 SLIT1-004 protein_coding Homo_sapiens 0 1358
ENST00000371070 SLIT1-003 protein_coding Homo_sapiens 0 5313
ENST00000456008 SLIT1-009 processed_transcript Homo_sapiens 0 584

Loading