C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tudor domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169504 Tdrd3-002 ENSMUSG00000022019 10090 + 14:87416639-87514766 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000169504
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000169504 0.986±0.23 1.205±0.12 1.540±0.66 1.373±0.05 0.775±0.24 0.540±0.07 0.390±0.05 0.670±0.07 0.414±0.11 1.993±0.25 1.262±0.36 1.307±0.49 0.611±0.32 0.476±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000MG CIL_0000MG_0002 CGP 14:86655367-87545373
CIL_0005KQ CIL_0005KQ_0003 CGP 14:87416639-88471396

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003682 ISS chromatin binding
GO:0003713 ISS transcription coactivator activity
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0016568 IEA chromatin modification
GO:0035064 ISS methylated histone binding
GO:0035145 ISS exon-exon junction complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000196169 TDRD3-201 protein_coding Homo_sapiens 0 2148
ENST00000377881 TDRD3-003 protein_coding Homo_sapiens 0 2250
ENST00000377882 TDRD3-005 protein_coding Homo_sapiens 0 706
ENST00000377894 TDRD3-001 protein_coding Homo_sapiens 0 2148
ENST00000471710 TDRD3-006 retained_intron Homo_sapiens 0 638
ENST00000484389 TDRD3-002 nonsense_mediated_decay Homo_sapiens 0 422
ENST00000535286 TDRD3-202 protein_coding Homo_sapiens 0 2270
ENST00000621840 TDRD3-203 protein_coding Homo_sapiens 0 2154

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