C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ADP-ribosylation factor 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169841 Arf5-201 ENSMUSG00000020440 10090 + 6:28423590-28426346 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000169841
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000169841 48.055±16.14 44.104±11.53 83.847±12.94 41.953±8.58 145.612±25.19 23.195±4.57 28.014±3.03 98.987±58.90 35.159±7.85 10.646±2.46 155.927±76.99 58.173±16.41 38.086±7.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LN CIL_0008LN_0002 VISTA 6:28095025-28698247
CIL_0001OK CIL_0001OK_0002 CGP 6:28239931-28428390
CIL_0001OJ CIL_0001OJ_0002 CGP 6:28416091-28428390
CIL_0001OI CIL_0001OI_0002 CGP 6:28423560-28438622

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005525 TAS GTP binding
GO:0005737 IDA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005886 IDA plasma membrane
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 TAS protein transport
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000000233 ARF5-001 protein_coding Homo_sapiens 0 1123
ENST00000415666 ARF5-007 protein_coding Homo_sapiens 0 680
ENST00000459680 ARF5-004 retained_intron Homo_sapiens 0 307
ENST00000463733 ARF5-002 retained_intron Homo_sapiens 0 693
ENST00000467281 ARF5-006 processed_transcript Homo_sapiens 0 268
ENST00000478328 FSCN3-005 processed_transcript Homo_sapiens 4e-25 119
ENST00000489673 ARF5-003 retained_intron Homo_sapiens 0 719

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